Programming a Pavlovian-like conditioning circuit in Escherichia coli

• Published in: Nature communications Vol. 5; no. 1; p. 3102
• Main Authors: Zhang, Haoqian, Lin, Min, Shi, Handuo, Ji, Weiyue, Huang, Longwen, Zhang, Xiaomeng, Shen, Shan, Gao, Rencheng, Wu, Shuke, Tian, Chengzhe, Yang, Zhenglin, Zhang, Guosheng, He, Siheng, Wang, Hao, Saw, Tiffany, Chen, Yiwei, Ouyang, Qi
• Format: Journal Article
• Language: English
• Published: England Nature Publishing Group 01.01.2014
• Subjects: Boolean; Circuits; Classical conditioning; E coli; Escherichia coli - genetics; Escherichia coli - physiology; Flow Cytometry; Food; Gene Regulatory Networks; Learning; Microscopy, Fluorescence; Process controls; Transfer RNA; Beijing China; China
• ISSN: 2041-1723; 2041-1723
• DOI: 10.1038/ncomms4102

Synthetic genetic circuits are programmed in living cells to perform predetermined cellular functions. However, designing higher-order genetic circuits for sophisticated cellular activities remains a substantial challenge. Here we program a genetic circuit that executes Pavlovian-like conditioning, an archetypical sequential-logic function, in Escherichia coli. The circuit design is first specified by the subfunctions that are necessary for the single simultaneous conditioning, and is further genetically implemented using four function modules. During this process, quantitative analysis is applied to the optimization of the modules and fine-tuning of the interconnections. Analogous to classical Pavlovian conditioning, the resultant circuit enables the cells to respond to a certain stimulus only after a conditioning process. We show that, although the conditioning is digital in single cells, a dynamically progressive conditioning process emerges at the population level. This circuit, together with its rational design strategy, is a key step towards the implementation of more sophisticated cellular computing.