A DNA microarray for species identification of cetacean animals in Korean water
Some whales caught incidentally or illegally in Korean waters have been introduced into the seafood market. Thus, the Korea Coast Guard (KCG) monitors and reports incidentally caught whales. However, species identification of some carcasses based on morphological features is difficult and often inac...
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| Published in | Biochip journal Vol. 4; no. 3; pp. 197 - 203 |
|---|---|
| Main Authors | , , , , , , , , , |
| Format | Journal Article |
| Language | English |
| Published |
Heidelberg
The Korean BioChip Society (KBCS)
01.09.2010
Springer Nature B.V 한국바이오칩학회 |
| Subjects | |
| Online Access | Get full text |
| ISSN | 1976-0280 2092-7843 |
| DOI | 10.1007/s13206-010-4306-6 |
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| Abstract | Some whales caught incidentally or illegally in Korean waters have been introduced into the seafood market. Thus, the Korea Coast Guard (KCG) monitors and reports incidentally caught whales. However, species identification of some carcasses based on morphological features is difficult and often inaccurate, particular for processed whale products in the marketplace. For these reasons, we developed a DNA microarray that distinguishes 9 species of cetacean animals for quick and simple species identification. We verified genetic variations in whales and designed species-specific oligonucleotide probes by sequence analysis of mitochondrial cytochrome c oxidase subunit I. Fluorescent dye-labeled DNA targets were generated with a fluorescent dye-labeled primer and hybridized onto a DNA microarray consisting of short probes that were 29-37 nucleotides in length. A DNA microarray system using species-specific probes was successful at rapidly identifying 9 species of whales on the basis of hybridization patterns. |
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| AbstractList | Some whales caught incidentally or illegally in Korean waters have been introduced into the seafood market. Thus, the Korea Coast Guard (KCG) monitors and reports incidentally caught whales. However, species identification of some carcasses based on morphological features is difficult and often inaccurate, particular for processed whale products in the marketplace. For these reasons, we developed a DNA microarray that distinguishes 9 species of cetacean animals for quick and simple species identification. We verified genetic variations in whales and designed species-specific oligonucleotide probes by sequence analysis of mitochondrial cytochrome c oxidase subunit I. Fluorescent dye-labeled DNA targets were generated with a fluorescent dye-labeled primer and hybridized onto a DNA microarray consisting of short probes that were 29-37 nucleotides in length. A DNA microarray system using species-specific probes was successful at rapidly identifying 9 species of whales on the basis of hybridization patterns. Some whales caught incidentally or illegally in Korean waters have been introduced into the seafood market. Thus, the Korea Coast Guard (KCG) monitors and reports incidentally caught whales. However, species identification of some carcasses based on morphological features is difficult and often inaccurate, particular for processed whale products in the marketplace. For these reasons, we developed a DNA microarray that distinguishes 9 species of cetacean animals for quick and simple species identification. We verified genetic variations in whales and designed species-specific oligonucleotide probes by sequence analysis of mitochondrial cytochrome c oxidase subunit I. Fluorescent dye-labeled DNA targets were generated with a fluorescent dye-labeled primer and hybridized onto a DNA microarray consisting of short probes that were 29-37 nucleotides in length. A DNA microarray system using species specific probes was successful at rapidly identifying 9 species of whales on the basis of hybridization patterns. KCI Citation Count: 16 |
| Author | Kang, Jung-Ha Park, Jung Youn Kim, Mi-Jung Hwang, Seung Yong Moon, Hyo-Bang An, Yong-Rock Jung, Jin-Wook Kim, Ji-Hoon Lee, Won Sun An, Cheul Min |
| Author_xml | – sequence: 1 givenname: Jung Youn surname: Park fullname: Park, Jung Youn organization: Department of Biotechnology, National Fisheries Research and Development Institute – sequence: 2 givenname: Ji-Hoon surname: Kim fullname: Kim, Ji-Hoon organization: Department of Biochemistry, Hanyang University & GenoCheck Co., Ltd – sequence: 3 givenname: Yong-Rock surname: An fullname: An, Yong-Rock organization: Cetacean Research Institute, National Fisheries Research & Development Institute – sequence: 4 givenname: Mi-Jung surname: Kim fullname: Kim, Mi-Jung organization: Department of Biotechnology, National Fisheries Research and Development Institute – sequence: 5 givenname: Won Sun surname: Lee fullname: Lee, Won Sun organization: Department of Biochemistry, Hanyang University & GenoCheck Co., Ltd – sequence: 6 givenname: Cheul Min surname: An fullname: An, Cheul Min organization: Department of Biotechnology, National Fisheries Research and Development Institute – sequence: 7 givenname: Jin-Wook surname: Jung fullname: Jung, Jin-Wook organization: Department of Biochemistry, Hanyang University & GenoCheck Co., Ltd – sequence: 8 givenname: Jung-Ha surname: Kang fullname: Kang, Jung-Ha organization: Department of Biotechnology, National Fisheries Research and Development Institute – sequence: 9 givenname: Hyo-Bang surname: Moon fullname: Moon, Hyo-Bang organization: Department of Environmental Marine Sciences, College of Science and Technology, Hanyang University – sequence: 10 givenname: Seung Yong surname: Hwang fullname: Hwang, Seung Yong email: syhwang@hanyang.ac.kr organization: Department of Biochemistry, Hanyang University & GenoCheck Co., Ltd |
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| CitedBy_id | crossref_primary_10_1007_s12601_016_0036_6 crossref_primary_10_1007_s13206_011_5306_x crossref_primary_10_1080_24701394_2019_1611799 crossref_primary_10_1007_s13206_013_7206_8 crossref_primary_10_1007_s13206_011_5412_9 crossref_primary_10_1007_s13206_011_5111_6 crossref_primary_10_1002_ps_3520 crossref_primary_10_1007_s13206_014_8210_3 crossref_primary_10_4217_OPR_2011_33_1_035 |
| Cites_doi | 10.1371/journal.pbio.0020312 10.1016/S0379-0738(98)00185-6 10.1111/j.1471-8286.2006.01424.x 10.1016/S0379-0738(01)00403-0 10.1111/j.1365-2621.2004.tb11008.x 10.1007/BF01731581 10.1093/nar/gni156 10.1016/S0022-0981(03)00021-2 10.1111/j.1095-8649.2006.01286.x 10.1093/molbev/msm092 10.2307/2408678 10.1098/rsbl.2003.0025 10.1098/rstb.2005.1716 10.1016/S0379-0738(02)00398-5 10.1073/pnas.0406166101 10.1111/j.1471-8286.2007.01748.x 10.2144/05391RR01 10.1111/j.1558-5646.1985.tb00420.x |
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| Keywords | Cetacean animals DNA microarray system Whale Species identification Cytochrome c oxidase subunit I |
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| SubjectTerms | Animals Biomedical Engineering and Bioengineering Biotechnology Cetacea Chemistry Chemistry and Materials Science Coastguard services Cytochrome-c oxidase Deoxyribonucleic acid DNA DNA chips DNA microarrays DNA probes Dyes Fluorescent dyes Fluorescent indicators Genetic diversity Hybridization Nucleotide sequence Nucleotides Oligonucleotides Original Research Seafood Sequence analysis Species Whales 생물공학 |
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| Title | A DNA microarray for species identification of cetacean animals in Korean water |
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