Segmentation of Retinal Cysts From Optical Coherence Tomography Volumes Via Selective Enhancement

• Published in: IEEE journal of biomedical and health informatics Vol. 23; no. 1; pp. 273 - 282
• Main Authors: Gopinath, Karthik, Sivaswamy, Jayanthi
• Format: Journal Article
• Language: English
• Published: United States IEEE 01.01.2019; The Institute of Electrical and Electronics Engineers, Inc. (IEEE)
• Subjects: Artificial neural networks; Benchmarks; Clustering; CNN; cyst; Cysts; Data acquisition; Datasets; Image segmentation; Informatics; Information technology; Mapping; Motion segmentation; Neural networks; Noise reduction; OCT; Optical Coherence Tomography; Optical scanners; Protocol (computers); Retina; Segmentation; Three-dimensional displays; Tomography
• ISSN: 2168-2194; 2168-2208
• DOI: 10.1109/JBHI.2018.2793534

Automated and accurate segmentation of cystoid structures in optical coherence tomography (OCT) is of interest in the early detection of retinal diseases. It is, however, a challenging task. We propose a novel method for localizing cysts in 3-D OCT volumes. The proposed work is biologically inspired and based on selective enhancement of the cysts, by inducing motion to a given OCT slice. A convolutional neural network is designed to learn a mapping function that combines the result of multiple such motions to produce a probability map for cyst locations in a given slice. The final segmentation of cysts is obtained via simple clustering of the detected cyst locations. The proposed method is evaluated on two public datasets and one private dataset. The public datasets include the one released for the OPTIMA cyst segmentation challenge (OCSC) in MICCAI 2015 and the DME dataset. After training on the OCSC train set, the method achieves a mean dice coefficient (DC) of 0.71 on the OCSC test set. The robustness of the algorithm was examined by cross validation on the DME and AEI (private) datasets and a mean DC values obtained were 0.69 and 0.79, respectively. Overall, the proposed system has the highest performance on all the benchmarks. These results underscore the strengths of the proposed method in handling variations in both data acquisition protocols and scanners.