Genomic amplification of chromosome 7 in the Doxorubicin resistant K562 cell line

• Published in: Bioinformation Vol. 14; no. 9; pp. 587 - 593
• Main Authors: Ibrahim, Sara M, Karim, Sajjad, Abusamra, Heba, Pushparaj, Peter N, Khan, Jalaluddin A, Abuzenadah, Adel M, Gari, Mamdooh A, Bakhashab, Sherin, Ahmed, Farid, Al-Qahtani, Mohammed H
• Format: Journal Article
• Language: English
• Published: Singapore Biomedical Informatics 01.01.2018
• Subjects: Acute myeloid leukemia; Amplification; Cancer; Chromosome 7; Chromosomes; Copy number; Doxorubicin; Drug resistance; Efflux; Genomes; Hybridization; Hypothesis; Leukemia; mRNA; Multidrug resistance; Myeloid leukemia; Phenotypes; Acute myeloid leukemia; chromosome 7 amplification; multi drug resistance
• ISSN: 0973-2063; 0973-8894; 0973-2063
• DOI: 10.6026/97320630014587

Acquisition of multi-drug resistance (MDR) is a major hindrance towards the successful treatment of cancers. Over expression of a range of ATP-dependent efflux pumps, particularly ABCB1 is a widely reported mechanism of cancer cell MDR. Approximately 30% acute myeloid leukemia (AML) patients demonstrate ABCB1 over expression. Several mechanisms for up regulation of ABCB1 have been proposed. Our aim was to investigate the role of genomic amplification of the chromosome 7 region with regard to its influence on ABCB1 over expression in AML cell line. For this, we developed Doxorubicin (Dox) resistant leukemic cell line from K562 cells, demonstrating MDR phenotype. The chromosomal changes associated with the acquisition of MDR were characterized by array- based comparative genomic hybridization (aCGH) with the parental K562 cell line as the reference genome. Significant genomic gains in the chromosomal region corresponding to 7q11.21-7q22.1 were observed in Dox selected cell line. Moreover, the amplicon contains the ABCB1 gene locus at 7q21.1 with a copy number gain of >4. ABCB1 mRNA was found to be up-regulated by54-fold. Our results demonstrate that the development of MDR in K562/Dox is underlined by a genomic amplification of the chromosome 7 region harboring the ABCB1 gene.