Secretome Profiling and Computational Biology of Human Leiomyoma Samples Unravel Molecular Signatures with Potential for Diagnostic and Therapeutic Interventions

• Published in: Reproductive sciences (Thousand Oaks, Calif.) Vol. 28; no. 9; pp. 2672 - 2684
• Main Authors: Sahar, Tahreem, Nigam, Aruna, Anjum, Shadab, Gupta, Nimisha, Wajid, Saima
• Format: Journal Article
• Language: English
• Published: Cham Springer International Publishing 01.09.2021
• Subjects: Biomarkers, Tumor - blood; Biomarkers, Tumor - metabolism; Case-Control Studies; Chromatography, Liquid; Computational Biology; Embryology; Female; Ficolins; General Gynecology: Original Article; Humans; Lectins - metabolism; Leiomyoma - blood; Leiomyoma - metabolism; Leiomyoma - therapy; Lumican - metabolism; Mannose-Binding Protein-Associated Serine Proteases - metabolism; Medicine; Medicine & Public Health; Neoplasm Proteins - metabolism; Nuclear Proteins - metabolism; Obstetrics/Perinatology/Midwifery; Predictive Value of Tests; Prognosis; Protein Interaction Maps; Proteome; Proteomics; Repressor Proteins - metabolism; Reproducibility of Results; Reproductive Medicine; Secretome; Serpins - metabolism; Tandem Mass Spectrometry; Uterine Neoplasms - blood; Uterine Neoplasms - metabolism; Uterine Neoplasms - therapy; Proteome; Nano LC-MS/MS; Uterine leiomyomas; Comparative proteomics; Relative quantification
• ISSN: 1933-7191; 1933-7205; 1933-7205
• DOI: 10.1007/s43032-021-00580-9

In recent years, significant advancements have been made in the way the complex proteome samples are compared but the ultimate goal of routine biomarker discovery has yet to be achieved. Based on reverse genetic strategy, our study involved the spotting of genes showing expressional variability in uterine leiomyoma females. Serum samples were taken from uterine leiomyomas subjects ( n =6) and healthy control subjects ( n =6) for proteomic studies. Additionally, leiomyoma tissue samples ( n =25) and normal myometrium samples ( n =25) were taken for validation studies. In this study, we profiled the proteomes of uterine leiomyoma patient’s serum and healthy control, along with relative quantification using Nano LC-MS/MS analysis. A total of 146 proteins were reported to be significantly differentially expressed ( P value less than 0.05) in case and control sample. Statistical analysis identified a number of molecular signatures distinguishing healthy from diseased serum. Among these, five proteins lumican, ficolin, MASP2, EMSY, and kallistatin were further chosen according to their function for validation. Kallistatin was downregulated while ficolin, MASP2, lumican, and EMSY were found to be upregulated in the diseased sample. The expression modulations in the identified genes were further validated in twenty-five cases. Interactions among the differentially expressed proteins were identified followed with network analysis. Network analysis emphasized important pathways that are highly deregulated in myoma, and functional significance of these pathways in the pathology of the disease was discussed. Comparative expression analysis reveals distinct molecular signatures and their probable role in diagnosis of the disease.