SINE targeting of bovine microsatellites from bovine/rodent hybrid cell lines
Short interspersed elements (SINEs), ubiquitous components of eukaryote genomes, can provide primers to PCR amplify DNA segments flanked by these sequences. Species (or family) specificity of SINEs has turned out to be valuable for isolation of species-specific sequences from complex and limited DNA...
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| Published in | Mammalian genome Vol. 8; no. 5; pp. 365 - 367 |
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| Main Authors | , , , , , |
| Format | Journal Article |
| Language | English |
| Published |
United States
Springer Nature B.V
01.05.1997
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| Subjects | |
| Online Access | Get full text |
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| Abstract | Short interspersed elements (SINEs), ubiquitous components of eukaryote genomes, can provide primers to PCR amplify DNA segments flanked by these sequences. Species (or family) specificity of SINEs has turned out to be valuable for isolation of species-specific sequences from complex and limited DNA sources by inter-SINE PCR amplification. A high frequency of bovine C-A SINE-elements is known to possess dinucleotide microsatellite tails, suggesting their enrichment among sequences amplified by inter-SINE PCR. In the present paper we describe a SINE-targeting method utilizing this association in microsatellite marker isolation from specific bovine chromosomes. This method may serve as a tool to increase marker density in regions of interest, such as sites of putative QTL, or gaps in the available bovine linkage maps. |
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| AbstractList | Short interspersed elements (SINEs), ubiquitous components of eukaryote genomes, can provide primers to PCR amplify DNA segments flanked by these sequences. Species (or family) specificity of SINEs has turned out to be valuable for isolation of species-specific sequences from complex and limited DNA sources by inter-SINE PCR amplification. A high frequency of bovine C-A SINE-elements is known to possess dinucleotide microsatellite tails, suggesting their enrichment among sequences amplified by inter-SINE PCR. In the present paper we describe a SINE-targeting method utilizing this association in microsatellite marker isolation from specific bovine chromosomes. This method may serve as a tool to increase marker density in regions of interest, such as sites of putative QTL, or gaps in the available bovine linkage maps. |
| Author | Kostia, S Vilkki, J Pirinen, M Womack, J E Barendse, W Varvio, S L |
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| BackLink | https://www.ncbi.nlm.nih.gov/pubmed/9107686$$D View this record in MEDLINE/PubMed |
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| Cites_doi | 10.1007/BF00389543 10.1038/ng0394-227 10.1007/978-1-4615-2878-4_5 10.1093/nar/20.12.2955 10.1111/j.1365-2052.1994.tb00195.x 10.1007/BF00426077 10.1016/0022-2836(84)90292-4 10.1111/j.1365-2052.1994.tb00460.x 10.1093/oxfordjournals.jhered.a110160 10.1073/pnas.86.17.6686 10.1007/s003359900340 |
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| References | L Ferretti (80500365_CR5) 1994; 25 HS Sun (80500365_CR9) 1994; 25 JE Womack (80500365_CR11) 1986; 77 J Skowronski (80500365_CR8) 1984; 177 D Vaiman (80500365_CR10) 1994; 5 W Barendse (80500365_CR2) 1996; 8 DL Nelson (80500365_CR7) 1989; 86 PL Deininger (80500365_CR4) 1993; 27 W Davies (80500365_CR3) 1994; 5 J Kaukinen (80500365_CR6) 1992; 20 W Barendse (80500365_CR1) 1994; 6 |
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| SubjectTerms | Animals Base Sequence Cattle - genetics Cell lines Chromosome Mapping DNA - genetics DNA Primers - genetics Gene Targeting - methods Hybrid Cells Microsatellite Repeats Molecular Sequence Data |
| Title | SINE targeting of bovine microsatellites from bovine/rodent hybrid cell lines |
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