Effect of the Asn side chain on the dissociation of deprotonated peptides elucidated by IRMPD spectroscopy

• Published in: International journal of mass spectrometry Vol. 354-355; pp. 70 - 77
• Main Authors: Grzetic, Josipa, Oomens, Jos
• Format: Journal Article
• Language: English
• Published: Elsevier B.V 15.11.2013
• Subjects: Asparagine; Deprotonated peptide; Ion spectroscopy; Peptide fragmentation; Succinimide; Asparagine; Peptide fragmentation; Ion spectroscopy; Deprotonated peptide; Succinimide
• ISSN: 1387-3806; 1873-2798
• DOI: 10.1016/j.ijms.2013.05.005

•Non-oxazolone b-type fragments identified for deprotonated peptides.•b-Type anions from Asn-containing peptides have succinimide structure.•b2 and b3 anions investigated.•IR spectroscopy distinguishes between imide and isoimide structures. Infrared ion spectroscopy using the free electron laser FELIX was applied to identify the structure of b-type peptide fragments generated by collision and IR multiple-photon induced dissociation from singly deprotonated peptides containing an asparagine residue, in particular AlaAsnAla (ANA) and AlaAlaAsnAla (AANA). IR spectra were recorded over the 800–1800cm−1 spectral range by multiple-photon dissociation (IRMPD) spectroscopy and have been compared with density functional theory (DFT) calculated spectra at the B3LYP/6-31++G(d,p) level for different isomeric ion structures for structural characterization. Results unambiguously show that the b2 and b3 fragment anions do not possess the common oxazolone or diketopiperazine structure, but involve cyclization of the asparagine side chain. Nucleophilic attack from the side chain amide nitrogen on the peptide backbone carbonyl carbon leads to the formation of cyclic succinimide structures. Deprotonation is shown to occur on the succinimide nitrogen, which delocalizes the negative charge over two adjacent carbonyl groups thus enhancing the gas-phase stability.