Systematic analysis and expression profiles of TCP gene family in Tartary buckwheat (Fagopyrum tataricum (L.) Gaertn.) revealed the potential function of FtTCP15 and FtTCP18 in response to abiotic stress

• Published in: BMC genomics Vol. 23; no. 1; p. 415
• Main Authors: Yang, Mingfang, He, Guandi, Hou, Qiandong, Fan, Yu, Duan, Lili, Li, Kuiyin, Wei, Xiaoliao, Qiu, Zhilang, Chen, Erjuan, He, Tengbing
• Format: Journal Article
• Language: English
• Published: England BioMed Central 02.06.2022; BMC
• Subjects: Abiotic stress; Buckwheat; Chromosomes; Climate change; Correlation analysis; Drought; Fagopyrum tataricum; FtTCP15; FtTCP18; Gene expression; Genes; Genomes; Genomics; Localization; Nature conservation; Phylogenetics; Phylogeny; Physiology; Plant resistance; Proteins; Rain; Rice; Stress; Stresses; Synteny; Tartary buckwheat; Tcp gene; TCP transcription factor; Transcription factors; Waterlogging; FtTCP15; Tartary buckwheat; Abiotic stress; FtTCP18; TCP transcription factor
• ISSN: 1471-2164; 1471-2164
• DOI: 10.1186/s12864-022-08618-1

As transcription factors, the TCP genes are considered to be promising targets for crop enhancement for their responses to abiotic stresses. However, information on the systematic characterization and functional expression profiles under abiotic stress of TCPs in Tartary buckwheat (Fagopyrum tataricum (L.) Gaertn.) is limited. In this study, we identified 26 FtTCPs and named them according to their position on the chromosomes. Phylogenetic tree, gene structure, duplication events, and cis-acting elements were further studied and syntenic analysis was conducted to explore the bioinformatic traits of the FtTCP gene family. Subsequently, 12 FtTCP genes were selected for expression analysis under cold, dark, heat, salt, UV, and waterlogging (WL) treatments by qRT-PCR. The spatio-temporal specificity, correlation analysis of gene expression levels and interaction network prediction revealed the potential function of FtTCP15 and FtTCP18 in response to abiotic stresses. Moreover, subcellular localization confirmed that FtTCP15 and FtTCP18 localized in the nucleus function as transcription factors. In this research, 26 TCP genes were identified in Tartary buckwheat, and their structures and functions have been systematically explored. Our results reveal that the FtTCP15 and FtTCP18 have special cis-elements in response to abiotic stress and conserved nature in evolution, indicating they could be promising candidates for further functional verification under multiple abiotic stresses.