Profiling and bioinformatics analyses reveal differential circular RNA expression in NK/T-cell lymphoma-associated hemophagocytic syndrome

• Published in: Bioscience reports Vol. 40; no. 9
• Main Authors: Man, Changfeng, Fan, Yu, Yin, Guangli, Huang, Jiayu, Wang, Jujuan, Qiu, Hongxia
• Format: Journal Article
• Language: English
• Published: England Portland Press Ltd 30.09.2020
• Subjects: Bioinformatics; Biomarkers - blood; Cancer; Cell-Free Nucleic Acids - blood; Cell-Free Nucleic Acids - metabolism; Computational Biology; Diagnostics & Biomarkers; Disease Progression; Humans; Lymphohistiocytosis, Hemophagocytic - blood; Lymphohistiocytosis, Hemophagocytic - genetics; Lymphoma, Extranodal NK-T-Cell - blood; Lymphoma, Extranodal NK-T-Cell - complications; Lymphoma, Extranodal NK-T-Cell - genetics; RNA, Circular - blood; RNA, Circular - metabolism; RNA-Seq; Up-Regulation; Bioinformatics analysis; NK/T-LAHS; Second-generation sequencing; Circular RNA; Biomarker
• ISSN: 0144-8463; 1573-4935
• DOI: 10.1042/BSR20201590

Circular RNAs (circRNAs) may be potential biomarkers or therapeutic targets of hemophagocytic syndrome (HPS) due to their high stability, covalently closed structure and implicated roles in gene regulation. The aim of the present study was to determine and characterize the circRNAs from natural killer (NK)/T-cell lymphoma-associated hemophagocytic syndrome (NK/T-LAHS). CircRNA in NK/T-LAHS and healthy control patient serum were assessed using next-generation sequencing (NGS). One hundred and forty-three differentially expressed circRNAs of which 114 were up-regulated and 29 were down-regulated in NK/T-LAHS patients were identified. Next, Gene Ontology (GO) function and Kyoto Encyclopedia of Genes and Genomes (KEGG) pathway analyses to explore the roles of these circRNAs were utilized, and a microRNA (miRNA) target gene prediction software to predict the interaction of circRNAs and miRNAs was used. Moreover, five circRNAs were then selected as NK/T-LAHS candidate circRNAs which were related to tumors and contained NK/T-LAHS-related miRNA-binding sites. Using real-time PCR, the significant up-regulation of these five circRNAs in NK/T-LAHS patient serum were verified. Together these results show that circRNAs may serve as valuable diagnostic biomarkers of early NK/T-LAHS, with potential therapeutic targets in disease progression.