pymzML—Python module for high-throughput bioinformatics on mass spectrometry data

pymzML is an extension to Python that offers (i) an easy access to mass spectrometry (MS) data that allows the rapid development of tools, (ii) a very fast parser for mzML data, the standard data format in MS and (iii) a set of functions to compare or handle spectra. pymzML requires Python2.6.5+ and...

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Published inBioinformatics (Oxford, England) Vol. 28; no. 7; pp. 1052 - 1053
Main Authors BALD, Till, BARTHT, Johannes, NIEHUES, Anna, SPECHT, Michael, HIPPLER, Michael, FUFEZAN, Christian
Format Journal Article
LanguageEnglish
Published Oxford Oxford University Press 01.04.2012
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Summary:pymzML is an extension to Python that offers (i) an easy access to mass spectrometry (MS) data that allows the rapid development of tools, (ii) a very fast parser for mzML data, the standard data format in MS and (iii) a set of functions to compare or handle spectra. pymzML requires Python2.6.5+ and is fully compatible with Python3. The module is freely available on http://pymzml.github.com or pypi, is published under LGPL license and requires no additional modules to be installed. christian@fufezan.net.
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ISSN:1367-4803
1367-4811
DOI:10.1093/bioinformatics/bts066