The 3 ′ termini of small RNAs in Trypanosoma brucei
Post-transcriptional 3 ′ end formation is an essential step in the maturation of most small RNAs. Knowledge of the precise 3 ′ ends of mature RNAs is essential for defining 3 ′-processing activities. We have mapped the mature 3 ′ ends of Spliced Leader RNA, the U1, U2, U4, U5, and U6 small nuclear R...
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Published in | FEMS microbiology letters Vol. 236; no. 1; pp. 73 - 78 |
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Main Authors | , , , |
Format | Journal Article |
Language | English |
Published |
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Elsevier B.V
01.07.2004
Blackwell |
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Abstract | Post-transcriptional 3
′ end formation is an essential step in the maturation of most small RNAs. Knowledge of the precise 3
′ ends of mature RNAs is essential for defining 3
′-processing activities. We have mapped the mature 3
′ ends of Spliced Leader RNA, the U1, U2, U4, U5, and U6 small nuclear RNAs, the U3 small nucleolar RNA, and the 5S and 5.8S ribosomal RNAs by ligation-mediated PCR in
Trypanosoma brucei. With the exception of U5, two classes of 3
′ ends were observed: flush with the base of a stem–loop structure, and 1–2 nt extended from a stem–loop. Multiple mechanisms and structural features are likely to influence 3
′ end maturation of RNAs. |
---|---|
AbstractList | Post-transcriptional 3' end formation is an essential step in the maturation of most small RNAs. Knowledge of the precise 3' ends of mature RNAs is essential for defining 3'-processing activities. We have mapped the mature 3' ends of Spliced Leader RNA, the U1, U2, U4, U5, and U6 small nuclear RNAs, the U3 small nucleolar RNA, and the 5S and 5.8S ribosomal RNAs by ligation-mediated PCR in Trypanosoma brucei. With the exception of U5, two classes of 3' ends were observed: flush with the base of a stem-loop structure, and 1-2 nt extended from a stem-loop. Multiple mechanisms and structural features are likely to influence 3' end maturation of RNAs. Post-transcriptional 3 ′ end formation is an essential step in the maturation of most small RNAs. Knowledge of the precise 3 ′ ends of mature RNAs is essential for defining 3 ′-processing activities. We have mapped the mature 3 ′ ends of Spliced Leader RNA, the U1, U2, U4, U5, and U6 small nuclear RNAs, the U3 small nucleolar RNA, and the 5S and 5.8S ribosomal RNAs by ligation-mediated PCR in Trypanosoma brucei. With the exception of U5, two classes of 3 ′ ends were observed: flush with the base of a stem–loop structure, and 1–2 nt extended from a stem–loop. Multiple mechanisms and structural features are likely to influence 3 ′ end maturation of RNAs. |
Author | Zeiner, Gusti M Hitchcock, Robert A Sturm, Nancy R Campbell, David A |
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Keywords | Exonuclease Kinetoplastid snRNA rRNA snoRNA Kinetoplastida Protozoa Ribosomal RNA Trypanosoma brucei |
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Snippet | Post-transcriptional 3
′ end formation is an essential step in the maturation of most small RNAs. Knowledge of the precise 3
′ ends of mature RNAs is essential... Post-transcriptional 3' end formation is an essential step in the maturation of most small RNAs. Knowledge of the precise 3' ends of mature RNAs is essential... |
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SubjectTerms | Animals Biological and medical sciences Exonuclease Fundamental and applied biological sciences. Psychology Kinetoplastid Microbiology Nucleic Acid Conformation RNA, Protozoan - chemistry RNA, Protozoan - genetics RNA, Ribosomal, 5.8S - chemistry RNA, Ribosomal, 5.8S - genetics RNA, Ribosomal, 5S - chemistry RNA, Ribosomal, 5S - genetics RNA, Small Nuclear - chemistry RNA, Small Nuclear - genetics RNA, Small Nucleolar - chemistry RNA, Small Nucleolar - genetics rRNA snoRNA snRNA Trypanosoma brucei brucei - genetics |
Title | The 3 ′ termini of small RNAs in Trypanosoma brucei |
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