Improvement of the soy formate dehydrogenase properties by rational design

• Published in: Protein engineering, design and selection Vol. 28; no. 6; pp. 171 - 178
• Main Authors: Kargov, I.S., Kleimenov, S.Y., Savin, S.S., Tishkov, V.I., Alekseeva, A.A.
• Format: Journal Article
• Language: English
• Published: England Oxford University Press 01.06.2015
• Subjects: Candida boidinii; Enzyme Stability; Formate Dehydrogenases - chemistry; Formate Dehydrogenases - genetics; Formate Dehydrogenases - metabolism; Glycine max; Glycine max - enzymology; Models, Molecular; Mutagenesis, Site-Directed; Mycobacterium vaccae; Plant Proteins - chemistry; Plant Proteins - genetics; Plant Proteins - metabolism; Protein Conformation; rational design; site-directed mutagenesis; soya; modeling; structure; soya Glycine max
• ISSN: 1741-0126; 1741-0134
• DOI: 10.1093/protein/gzv007

Previous experiments on substitution of the residue Phe290 to Asp, Asn and Ser in NAD+-dependent formate dehydrogenase from soya Glycine max (SoyFDH) showed important role of the residue in enzyme thermal stability and catalytic properties (Alekseeva et al. Prot. Eng. Des. Sel., 2012a;25:781–88). In this work, we continued site-directed mutagenesis experiments of the Phe290 and the residue was changed to Ala, Thr, Tyr, Glu and Gln. All amino acid changes resulted in increase of catalytic constant from 2.9 to 3.5–4.7 s−1. The substitution Phe290Ala led to KMNAD+ decrease from 13.3 to 8.6 μM, and substitutions Phe290Tyr and Phe290Glu resulted in decrease and increase of KMHCOO− from 1.5 to 0.9 and –2.9 mM, respectively. The highest improvement of catalytic properties was observed for SoyFDH Phe290Ala which showed 2-fold higher catalytic efficiency with both substrates. Stability of mutants was examined by study of thermal inactivation kinetics and differential scanning calorimetry (DSC). All five amino acids provided increase of thermal stability of mutant SoyFDH in comparison with wild-type enzyme. Mutant SoyFDH Phe290Glu showed the highest improvement—the stabilization effect was 43 at 56°C. The DSC data agree with results of thermal inactivation kinetics. Substitutions Phe290Tyr, Phe290Thr, Phe290Gln and Phe290Glu provided Tm value increase 0.6°–6.6°. SoyFDH Phe290Glu and previously prepared SoyFDH Phe290Asp show similar thermal stability as enzymes from Candida boidinii and Mycobacterium vaccae N10 and have higher catalytic efficiency with NAD+ compared with all described FDHs. Therefore, these mutants are very perspective enzymes for coenzyme regeneration in processes of chiral synthesis with dehydrogenases.