Utility of the gas-phase sequencer for both liquid- and solid-phase degradation of proteins and peptides at low picomole levels

• Published in: Analytical biochemistry Vol. 140; no. 2; pp. 553 - 566
• Main Authors: Strickler, James E., Hunkapiller, Michael W., Wilson, Kenneth J.
• Format: Journal Article
• Language: English
• Published: San Diego, CA Elsevier Inc 01.08.1984; Elsevier
• Subjects: Amino Acid Sequence; Amino Acids - analysis; Analytical, structural and metabolic biochemistry; angiotensin; Autoanalysis - instrumentation; Biological and medical sciences; Chromatography, Gas - instrumentation; Fundamental and applied biological sciences. Psychology; gas-phase instrument; General aspects, investigation methods; Microchemistry; peptides; Peptides - analysis; picomole-level sequencing; Proteins; Proteins - analysis; peptides; gas-phase instrument; proteins; picomole-level sequencing
• ISSN: 0003-2697; 1096-0309
• DOI: 10.1016/0003-2697(84)90207-0

The utility of the commercially available gas-phase sequencer for complete analysis of peptide samples was investigated. Using the program supplied with the instrument, significant extractive loss of samples in Polybrene was observed, even at input levels up to 500 pmol. In order to reduce this loss, the sequencer program was modified by increasing the phenylisothiocyanate (PITC)-coupling steps from two to three and lengthening the duration of ethyl acetate (S2) delivery while reducing the delivery rate. These changes gave improved results with peptides, e.g., all eight residues of angiotensin II were identified at the 25-pmol level. In addition, background contamination was decreased and repetitive yields were increased. The instrument was also found to function well with samples coupled to solid supports; however, some of the methodologies that work adequately for covalent attachment of peptides to solid supports at the level 1–10 nmol were found to give unacceptable coupling/sequenceable yields at or below the 100-pmol level. The coupling methods tried were (1) reaction of homoserine lactone with aminopropyl (AP)-glass, (2) reaction of α- and ϵ-NH 2 groups with p-phenylenediisothiocyanate (DITC)-glass, and (3) reaction of α-COOH groups with aminoaryl (AA)-glass via EDAC (1-ethyl-3,3′-dimethylaminopropyl-carbodiimide). Of these, the first method gave combined yields of 42–94% while the latter two were only 9–35% efficient. The covalently bound samples provided sequence information even at the resulting low levels, e.g., 9 13 residues of dynorphin including Lys-13 at 11 pmol. In general, sequencer runs on solid-phase samples gave “cleaner” analyses and slightly higher repetitive yields (1–2%). Sequence information has also been obtained on peptides made by solid-phase synthesis prior to cleavage from the polystyrene support. With improved coupling efficiencies, solid-phase techniques would provide an alternative to immobilization of peptides in Polybrene films for low picomole level gas-phase sequencing.