Tag Thy Neighbour: Nanometre-Scale Insights Into Kinetoplastid Parasites With Proximity Dependent Biotinylation

• Published in: Frontiers in cellular and infection microbiology Vol. 12; p. 894213
• Main Authors: Geoghegan, Vincent, Mottram, Jeremy C, Jones, Nathaniel G
• Format: Journal Article
• Language: English
• Published: Switzerland Frontiers Media S.A 06.05.2022
• Subjects: Animals; BioID proximity labeling; Biotin - metabolism; Biotinylation; Cellular and Infection Microbiology; Humans; kinetoplastid; Kinetoplastida - metabolism; leishmania; Parasites - metabolism; proteomics; trypanosoma; BioID proximity labeling; biotinylation; kinetoplastid; leishmania; proteomics; trypanosoma; APEX2; BirA enzyme; mass spectrometry - LC-MS/MS
• ISSN: 2235-2988; 2235-2988
• DOI: 10.3389/fcimb.2022.894213

Proximity labelling is a powerful and rapidly developing technology for exploring the interaction space and molecular environment of a protein of interest at the nanometre scale. In proximity labelling, a promiscuous biotinylating enzyme is genetically fused to the protein of interest, initiation of labelling then results in the biotinylating enzyme generating reactive biotin which covalently 'tags' nearby molecules. Importantly, this labelling takes place whilst the protein of interest continues to perform its normal functions in the cell. Due to its unique advantageous characteristics, proximity labelling is driving discoveries in an ever increasing range of organisms. Here, we highlight the applications of proximity labelling to the study of kinetoplastids, a group of eukaryotic protozoa that includes trypanosomes and which can cause serious disease in humans and livestock. We first provide a general overview of the proximity labelling experimental workflow including key labelling enzymes used, proper experimental design with appropriate controls and robust statistical analysis to maximise the amount of reliable spatial information that is generated. We discuss studies employing proximity labelling in kinetoplastid parasites to illustrate how these key principles of experimental design are applied. Finally, we highlight emerging trends in the development of proximity labelling methodology.