Determination of reverse transcriptase inhibitor resistance mutations in HIV-1 infected children in Côte d'Ivoire

• Published in: Genome Vol. 64; no. 4; pp. 347 - 354
• Main Authors: Camara-Cisse, Massara, Djohan, Youzan Ferdinad, Toni, Thomas d'Aquin, Dechi, Jean-Jacques Renaud, N'Din, Jean-Louis Philippe, Lohoues, Esmel Essis, Monde, Absalome Aké, Gogbe, Leto Olivier, Brou, Emmanuel, Fieni, Flore, Mansour, Franck Adéoti, Aby, Roland, Kouakou, Kouadio, Chenal, Henri
• Format: Journal Article
• Language: English
• Published: Canada Canadian Science Publishing NRC Research Press 01.04.2021
• Subjects: Accessibility; Algorithms; Antiviral agents; Children; HIV; Human immunodeficiency virus; Inhibitors; Load resistance; Mutation; Non-nucleoside reverse transcriptase inhibitors; Nucleoside reverse transcriptase inhibitors; Nucleosides; Phylogenetics; Phylogeny; RNA-directed DNA polymerase; HIV-1; reverse transcriptase inhibitors; phylogénie moléculaire; VIH-1; molecular phylogeny; inhibiteurs de la transcriptase inverse; Côte d’Ivoire
• ISSN: 0831-2796; 1480-3321
• DOI: 10.1139/gen-2020-0112

Treatment scale-up is leading to a progressive increase in HIV resistance to antiretrovirals, especially in children. To assess resistance to reverse transcriptase inhibitors (RTIs) in HIV-1 infected children in Côte d'Ivoire, genotypic resistance tests were performed and interpreted using the ANRS algorithm (www.hivfrenchresistance.org). Phylogenetic trees were created using BioEdit v7 and Mega7 software. The frequency of resistance to at least one RTI was 79%. It was 88% for nucleoside reverse transcriptase inhibitors (NRTIs), 71% for non-nucleoside reverse transcriptase inhibitors (NNRTIs), and 63% for both classes (NRTI + NNRTI). The frequency of resistance was 50% for the ZDV + 3TC + EFV combination, 42% for the ABC + 3TC + EFV combination, and 8% for the TDF + 3TC + EFV combination. Frequently encountered resistance mutations were for NRTIs: M184V (88%), TAMs (67%), T215F/I/V/Y (33%), and L74I/V (24%); for NNRTIs: K103N/S (74%), P225H (26%), and G190A/E/Q (24%). The synthesis of phylogenetic analyses showed the predominance of the viral subtype CRF02_AG (85%). These results show a high prevalence of resistance to RTIs in children infected with HIV-1. Hence the interest of a more accessible monitoring of viral load and genotypic resistance tests in HIV-1 infected children undergoing treatment in Côte d'Ivoire.