Lactobacillus hokkaidonensis sp. nov., isolated from subarctic timothy grass (Phleum pratense L.) silage

• Published in: International journal of systematic and evolutionary microbiology Vol. 63; no. Pt 7; pp. 2526 - 2531
• Main Authors: Tohno, Masanori, Kitahara, Maki, Uegaki, Ryuichi, Irisawa, Tomohiro, Ohkuma, Moriya, Tajima, Kiyoshi
• Format: Journal Article
• Language: English
• Published: England International Union of Microbiological Societies 01.07.2013
• Subjects: Bacterial Typing Techniques; cell walls; DNA, Bacterial - genetics; fatty acids; Fatty Acids - analysis; Genes, Bacterial; Japan; lactic acid bacteria; Lactobacillus - classification; Lactobacillus - genetics; Lactobacillus - isolation & purification; Lactobacillus suebicus; Lactobacillus vaccinostercus; Molecular Sequence Data; Nucleic Acid Hybridization; nucleotide sequences; Phleum - microbiology; Phleum pratense; Phylogeny; ribosomal RNA; RNA, Ribosomal, 16S - genetics; sequence analysis; Sequence Analysis, DNA; silage; Silage - microbiology; Japan
• ISSN: 1466-5034; 1466-5026; 1466-5034
• DOI: 10.1099/ijs.0.047027-0

Four strains of Gram-positive, non-spore-forming, rod-shaped, catalase-negative and non-motile lactic acid bacteria, LOOC260T, LOOC253, LOOC273 and LOOC279, were isolated from timothy grass (Phleum pratense L.) silage produced in Hokkaido, a subarctic region of Japan. These isolates grew at 4–37 °C, indicating the psychrotolerant nature of these strains. Phylogenetic analysis on the basis of 16S rRNA and pheS gene sequences, as well as biochemical and physiological characteristics, indicated that these four strains were members of the genus Lactobacillus. 16S rRNA gene sequence analysis of strain LOOC260T demonstrated that the closest neighbours were the type strains of Lactobacillus suebicus (97.7 %), Lactobacillus oligofermentans (96.7 %) and Lactobacillus vaccinostercus (96.7 %). Strain LOOC260T showed low levels of DNA–DNA association with Lactobacillus suebicus JCM 9504T (14.7±3.5 %), Lactobacillus oligofermentans JCM 16175T (15.1±4.8 %) and Lactobacillus vaccinostercus JCM 1716T (10.7±3.0 %). The cell wall contained meso-diaminopimelic acid and the major fatty acids were C18 : 1ω9c and C19 : 1 cyclo 9,10. On the basis of phenotypic, physiological and phylogenetic evidence, these isolates represent a novel species of the genus Lactobacillus, for which the name Lactobacillus hokkaidonensis sp. nov. is proposed. The type strain is LOOC260T ( = JCM 18461T = DSM 26202T).