Population Structure and Genetic Diversity in Sweet Cassava Accessions in Paraná and Santa Catarina, Brazil

• Published in: Plant molecular biology reporter Vol. 38; no. 1; pp. 25 - 38
• Main Authors: Rocha, Vanesca Priscila Camargo, Gonçalves-Vidigal, Maria Celeste, Ortiz, Alex Henrique Tiene, Valentini, Giseli, Ferreira, Rebecca Caroline Ulbricht, Gonçalves, Tiago Maretti, Lacanallo, Giselly Figueiredo, Vidigal Filho, Pedro Soares
• Format: Journal Article
• Language: English
• Published: New York Springer US 01.03.2020; Springer Nature B.V
• Subjects: Alleles; Bioinformatics; Biological evolution; Biomedical and Life Sciences; Cassava; Cereal crops; Cultivation; Evolution; Genetic analysis; Genetic diversity; Genetic structure; Genetic variability; Germplasm; Heterozygosity; Life Sciences; Loci; Manihot esculenta; Markers; Metabolomics; Original Paper; Plant Breeding/Biotechnology; Plant Sciences; Polymorphism; Population; Population genetics; Population structure; Population studies; Proteomics; Rural areas; Soybeans; Structural analysis; Subpopulations; Urban areas; Brazil; Germplasm bank; SSR molecular markers; Heterozygosity
• ISSN: 0735-9640; 1572-9818
• DOI: 10.1007/s11105-019-01175-0

Manihot esculenta Crantz is originally from the Amazon region of Brazil, which has the highest genetic diversity. Due to the wide adaptation of cassava to the most diverse environments, the evolutionary forces acted on the crop, resulting in a more complex genetic structure. This study evaluated the population structure and the genetic diversity through 25 SSR markers of 144 sweet cassava accessions collected in seven places in the south of Brazil. All the loci analyzed were polymorphic and showed several alleles per loci with a mean of 3.36 alleles and 38 rare alleles in the population. The mean value of polymorphism information content (PIC) was 0.488, which indicates that the markers were informative and the mean observed heterozygosity was 0.644, while the mean expected heterozygosity was 0.557. The sweet cassava accessions were divided into 10 groups based on the population structure analysis. There was a moderate genetic differentiation (PhiPT = 0.106) among the sweet cassava subpopulations. The wide genetic variability among the studied accessions of sweet cassava demonstrates the importance of the emergency in the conservation of plants in germplasm banks, because the intense change in agriculture; the expansion of areas occupied by soybeans, corn, and other crops; and also the farmers’ migration from rural areas to urban areas reduced cassava cultivation over time, and as a consequence, genetic variability has been lost.