Genomic analysis and metabolic characteristics provide insights into inorganic nitrogen metabolism of novel bacterium Acinetobacter pittii J08
[Display omitted] •Novel HN-AD bacterium, A. pittii J08, was isolated from pond sediments.•High removals of inorganic N and TN-N were analyzed in different N conditions.•Whole genome sequence and N metabolic pathways were analyzed.•Strain J08 showed a high adaptability to various culture conditions....
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| Published in | Bioresource technology Vol. 408; p. 131228 |
|---|---|
| Main Authors | , , , , , , , , |
| Format | Journal Article |
| Language | English |
| Published |
England
Elsevier Ltd
01.09.2024
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| Subjects | |
| Online Access | Get full text |
| ISSN | 0960-8524 1873-2976 1873-2976 |
| DOI | 10.1016/j.biortech.2024.131228 |
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| Abstract | [Display omitted]
•Novel HN-AD bacterium, A. pittii J08, was isolated from pond sediments.•High removals of inorganic N and TN-N were analyzed in different N conditions.•Whole genome sequence and N metabolic pathways were analyzed.•Strain J08 showed a high adaptability to various culture conditions.
A novel A. pittii J08 with heterotrophic nitrification and aerobic denitrification (HN-AD) isolated from pond sediments could rapidly degrade inorganic nitrogen (N) and total nitrogen (TN-N) with ammonium (NH4+-N) preference. N degradation rate of NH4+-N, nitrite (NO2−-N) and nitrate (NO3−-N) were 3.9 mgL−1h−1, 3.0 mgL−1h−1 and 2.7 mgL−1h−1, respectively. In addition, strain J08 could effectively utilize most of detected low-molecular-weight carbon (LMWC) sources to degrade inorganic N with a wide adaptability to various culture conditions. Whole genome sequencing (WGS) analysis revealed that assembled genome of stain J08 possessed the crucial genes involved in dissimilatory/assimilatory NO3−-N reduction and NH4+-N assimilation. These results indicated that strain J08 could be applied to wastewater treatment in aquaculture. |
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| AbstractList | A novel A. pittii J08 with heterotrophic nitrification and aerobic denitrification (HN-AD) isolated from pond sediments could rapidly degrade inorganic nitrogen (N) and total nitrogen (TN-N) with ammonium (NH₄⁺-N) preference. N degradation rate of NH₄⁺-N, nitrite (NO₂⁻-N) and nitrate (NO₃⁻-N) were 3.9 mgL⁻¹h⁻¹, 3.0 mgL⁻¹h⁻¹ and 2.7 mgL⁻¹h⁻¹, respectively. In addition, strain J08 could effectively utilize most of detected low-molecular-weight carbon (LMWC) sources to degrade inorganic N with a wide adaptability to various culture conditions. Whole genome sequencing (WGS) analysis revealed that assembled genome of stain J08 possessed the crucial genes involved in dissimilatory/assimilatory NO₃⁻-N reduction and NH₄⁺-N assimilation. These results indicated that strain J08 could be applied to wastewater treatment in aquaculture. [Display omitted] •Novel HN-AD bacterium, A. pittii J08, was isolated from pond sediments.•High removals of inorganic N and TN-N were analyzed in different N conditions.•Whole genome sequence and N metabolic pathways were analyzed.•Strain J08 showed a high adaptability to various culture conditions. A novel A. pittii J08 with heterotrophic nitrification and aerobic denitrification (HN-AD) isolated from pond sediments could rapidly degrade inorganic nitrogen (N) and total nitrogen (TN-N) with ammonium (NH4+-N) preference. N degradation rate of NH4+-N, nitrite (NO2−-N) and nitrate (NO3−-N) were 3.9 mgL−1h−1, 3.0 mgL−1h−1 and 2.7 mgL−1h−1, respectively. In addition, strain J08 could effectively utilize most of detected low-molecular-weight carbon (LMWC) sources to degrade inorganic N with a wide adaptability to various culture conditions. Whole genome sequencing (WGS) analysis revealed that assembled genome of stain J08 possessed the crucial genes involved in dissimilatory/assimilatory NO3−-N reduction and NH4+-N assimilation. These results indicated that strain J08 could be applied to wastewater treatment in aquaculture. A novel A. pittii J08 with heterotrophic nitrification and aerobic denitrification (HN-AD) isolated from pond sediments could rapidly degrade inorganic nitrogen (N) and total nitrogen (TN-N) with ammonium (NH4+-N) preference. N degradation rate of NH4+-N, nitrite (NO2--N) and nitrate (NO3--N) were 3.9 mgL-1h-1, 3.0 mgL-1h-1 and 2.7 mgL-1h-1, respectively. In addition, strain J08 could effectively utilize most of detected low-molecular-weight carbon (LMWC) sources to degrade inorganic N with a wide adaptability to various culture conditions. Whole genome sequencing (WGS) analysis revealed that assembled genome of stain J08 possessed the crucial genes involved in dissimilatory/assimilatory NO3--N reduction and NH4+-N assimilation. These results indicated that strain J08 could be applied to wastewater treatment in aquaculture.A novel A. pittii J08 with heterotrophic nitrification and aerobic denitrification (HN-AD) isolated from pond sediments could rapidly degrade inorganic nitrogen (N) and total nitrogen (TN-N) with ammonium (NH4+-N) preference. N degradation rate of NH4+-N, nitrite (NO2--N) and nitrate (NO3--N) were 3.9 mgL-1h-1, 3.0 mgL-1h-1 and 2.7 mgL-1h-1, respectively. In addition, strain J08 could effectively utilize most of detected low-molecular-weight carbon (LMWC) sources to degrade inorganic N with a wide adaptability to various culture conditions. Whole genome sequencing (WGS) analysis revealed that assembled genome of stain J08 possessed the crucial genes involved in dissimilatory/assimilatory NO3--N reduction and NH4+-N assimilation. These results indicated that strain J08 could be applied to wastewater treatment in aquaculture. A novel A. pittii J08 with heterotrophic nitrification and aerobic denitrification (HN-AD) isolated from pond sediments could rapidly degrade inorganic nitrogen (N) and total nitrogen (TN-N) with ammonium (NH -N) preference. N degradation rate of NH -N, nitrite (NO -N) and nitrate (NO -N) were 3.9 mgL h , 3.0 mgL h and 2.7 mgL h , respectively. In addition, strain J08 could effectively utilize most of detected low-molecular-weight carbon (LMWC) sources to degrade inorganic N with a wide adaptability to various culture conditions. Whole genome sequencing (WGS) analysis revealed that assembled genome of stain J08 possessed the crucial genes involved in dissimilatory/assimilatory NO -N reduction and NH -N assimilation. These results indicated that strain J08 could be applied to wastewater treatment in aquaculture. |
| ArticleNumber | 131228 |
| Author | Zhong, Zi-Rou Kuang, Xu-Ying Ou, Jie Wang, Fei Xie, Qing Qin, Zi-Le Huang, Ming-Zhu Luo, Sheng-Wei Fang, Zi-Xuan |
| Author_xml | – sequence: 1 givenname: Jie surname: Ou fullname: Ou, Jie organization: State Key Laboratory of Developmental Biology of Freshwater Fish, Engineering Research Center of Polyploidy Fish Reproduction and Breeding of the State Education Ministry, College of Life Science, Hunan Normal University, Changsha 410081, China – sequence: 2 givenname: Qing surname: Xie fullname: Xie, Qing organization: State Key Laboratory of Developmental Biology of Freshwater Fish, Engineering Research Center of Polyploidy Fish Reproduction and Breeding of the State Education Ministry, College of Life Science, Hunan Normal University, Changsha 410081, China – sequence: 3 givenname: Zi-Rou surname: Zhong fullname: Zhong, Zi-Rou organization: State Key Laboratory of Developmental Biology of Freshwater Fish, Engineering Research Center of Polyploidy Fish Reproduction and Breeding of the State Education Ministry, College of Life Science, Hunan Normal University, Changsha 410081, China – sequence: 4 givenname: Fei surname: Wang fullname: Wang, Fei organization: State Key Laboratory of Developmental Biology of Freshwater Fish, Engineering Research Center of Polyploidy Fish Reproduction and Breeding of the State Education Ministry, College of Life Science, Hunan Normal University, Changsha 410081, China – sequence: 5 givenname: Ming-Zhu surname: Huang fullname: Huang, Ming-Zhu organization: National R&D Center for Freshwater Fish Processing, Jiangxi Normal University, Nanchang 330022, China – sequence: 6 givenname: Zi-Xuan surname: Fang fullname: Fang, Zi-Xuan organization: State Key Laboratory of Developmental Biology of Freshwater Fish, Engineering Research Center of Polyploidy Fish Reproduction and Breeding of the State Education Ministry, College of Life Science, Hunan Normal University, Changsha 410081, China – sequence: 7 givenname: Xu-Ying surname: Kuang fullname: Kuang, Xu-Ying organization: State Key Laboratory of Developmental Biology of Freshwater Fish, Engineering Research Center of Polyploidy Fish Reproduction and Breeding of the State Education Ministry, College of Life Science, Hunan Normal University, Changsha 410081, China – sequence: 8 givenname: Zi-Le surname: Qin fullname: Qin, Zi-Le organization: State Key Laboratory of Developmental Biology of Freshwater Fish, Engineering Research Center of Polyploidy Fish Reproduction and Breeding of the State Education Ministry, College of Life Science, Hunan Normal University, Changsha 410081, China – sequence: 9 givenname: Sheng-Wei surname: Luo fullname: Luo, Sheng-Wei email: swluo@hunnu.edu.cn, swluo1@163.com organization: State Key Laboratory of Developmental Biology of Freshwater Fish, Engineering Research Center of Polyploidy Fish Reproduction and Breeding of the State Education Ministry, College of Life Science, Hunan Normal University, Changsha 410081, China |
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•Novel HN-AD bacterium, A. pittii J08, was isolated from pond sediments.•High removals of inorganic N and TN-N were analyzed in different N... A novel A. pittii J08 with heterotrophic nitrification and aerobic denitrification (HN-AD) isolated from pond sediments could rapidly degrade inorganic... |
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| SubjectTerms | Acinetobacter ammonium aquaculture bacteria carbon Degradation pathway denitrification Gene expression genome genomics Heterotrophic nitrification and aerobic denitrification nitrates nitrification nitrites nitrogen Nitrogen assimilation nitrogen metabolism total nitrogen wastewater treatment |
| Title | Genomic analysis and metabolic characteristics provide insights into inorganic nitrogen metabolism of novel bacterium Acinetobacter pittii J08 |
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