Transcriptomics and metatranscriptomics in zooplankton: wave of the future?

• Published in: Journal of plankton research Vol. 43; no. 1; pp. 3 - 9
• Main Authors: Lenz, Petra H, Lieberman, Brandon, Cieslak, Matthew C, Roncalli, Vittoria, Hartline, Daniel K
• Format: Journal Article
• Language: English
• Published: Oxford University Press 01.01.2021
• Subjects: physiology; ecology; transcriptome; gene expression
• ISSN: 0142-7873; 1464-3774
• DOI: 10.1093/plankt/fbaa058

Abstract Molecular tools have changed the understanding of zooplankton biodiversity, speciation, adaptation, population genetics and global patterns of connectivity. However, the molecular resources needed to capitalize on these advances continue to be limited in comparison with those available for other eukaryotic plankton. This deficiency could be addressed through an Ocean Zooplankton Open ‘Omics Project (Ocean ZOOP) that would generate de novo assembled transcriptomes for hundreds of metazoan plankton species. A collection of comparable reference transcriptomes would generate a new framework for ecological and physiological studies. Defining species niches, identifying optimal habitats, assessing adaptive capacity and predicting changes in phenology are just a few examples of how such a resource could transform studies on zooplankton ecology.