Analysis of key genes for the survival of Pantoea agglomerans under nutritional stress

• Published in: International journal of biological macromolecules Vol. 253; p. 127059
• Main Authors: Xiao, Jiawen, Sun, Shangyi, Liu, Zhaosha, Fan, Chenxi, Zhu, Baocheng, Zhang, Dongdong
• Format: Journal Article
• Language: English
• Published: Elsevier B.V 31.12.2023
• Subjects: Nutritional stress; Pantoea agglomerans; Phytopathogen; Survival; Transposon insertion sequencing (Tn-seq); Pantoea agglomerans; Nutritional stress; Phytopathogen; Transposon insertion sequencing (Tn-seq); Survival
• ISSN: 0141-8130; 1879-0003
• DOI: 10.1016/j.ijbiomac.2023.127059

The absolute amount of nutrients on plant leaves is usually low, and the growth of epiphytic bacteria is typically limited by nutrient content. Thus, is of great significance to study the survival mechanism of epiphytes under nutritional stress for plant disease control. In this paper, Pantoea agglomerans CHTF15 isolated from walnut leaves was used to detect the key genes for the survival of the bacterium under simulated nutrient stress in artificial medium. Genome sequencing was combined with transposon insertion sequencing (Tn-seq) for the detection technique. A total of 105 essential genes were screened from the whole genome. The genes were mainly related to the nucleotide metabolism, protein metabolism, biological oxidation and the gene repair of bacteria analyzed by gene ontology (GO) enrichment analysis. Volcano map analysis demonstrated that the functions of the 15 genes with the most significant differences were generally related to the synthesis of amino acids or proteins, the nucleotide metabolism and homologous recombination and repair. Competitive index analysis revealed that the deletion of the genes dksA and epmA regulating protein synthesis, the gene ribB involved in the nucleotide metabolism and the gene xerD involved in recombination repair induced a significant reduction in the survival ability of the corresponding mutants in the 0.10 % YEP medium and the walnut leaf surface. The results act as a foundation for further in-depth research on the infection process and the mechanisms of pathogenic bacteria.