Comparison of chemometric models using Raman spectroscopy for offline biochemical monitoring throughout the VLP-making upstream process

• Published in: Biochemical engineering journal Vol. 198; p. 109013
• Main Authors: Oliveira Guardalini, Luis Giovani, Aragão Tejo Dias, Vinícius, Leme, Jaci, Consoni Bernardino, Thaissa, Mancini Astray, Renato, da Silveira, Suellen Regina, Lee Ho, Paulo, Tonso, Aldo, Attie Calil Jorge, Soraia, Fernández Núñez, Eutimio Gustavo
• Format: Journal Article
• Language: English
• Published: Elsevier B.V 01.09.2023
• Subjects: Artificial Neural Network; Bioprocess Monitoring; Partial Least Squares; Principal Component Regression; Support Vector Machine; Virus-Like Particles; Bioprocess Monitoring; Principal Component Regression; Support Vector Machine; Artificial Neural Network; Partial Least Squares; Virus-Like Particles
• ISSN: 1369-703X; 1873-295X
• DOI: 10.1016/j.bej.2023.109013

This work aimed to compare the predictive capacity of linear (Partial Least Squares; Principal Component Regression) and non-linear (Artificial Neural Network, ANN; Support Vector Machine, SVM) chemometric models from Raman spectroscopy spectra acquired offline with (unclarified samples) and without cells (clarified samples), and biochemical parameters (Viable cell density, cell viability, glucose, lactate, glutamine, glutamate, ammonium, and potassium) quantified by reference methods in a rabies VLP production bioprocess. The nonlinear models, ANN and SVM were the more suitable models with the lowest absolute errors. No effective differences in accuracy were detected for models from spectral data with and without cells. The mean absolute error of the best models within the assessed parameter ranges for viable cell density (0.01–8.83 × 106 cells/mL), cell viability (1.3–100.0%), glucose (5.22–10.93 g L−1), lactate (18.6–152.7 mg L−1), glutamine (158–1761 mg L−1), glutamate (807.6–2159.7 mg L−1), ammonium (62.8–117.8 mg L−1), and potassium (531.6–685. 3 mg L−1) were 0.17 ± 0.13 × 106 cells/mL, 6.8 ± 7.1%, 0.24 ± 0.14 g L− 1, 3.3 ± 3.5 mg L− 1, 61 ± 52 mg L− 1, 52 ± 51 mg L− 1, 2.1 ± 1.9 mg L− 1 and 8.6 ± 8.6 mg L− 1, respectively. The errors achieved were like those for bioprocesses using a highlighted animal cell host (CHO cell) in similar ranges. [Display omitted] •Monitoring of Rabies virus-like particles production using offline Raman spectra.•Accuracy was alike between chemometrics models for samples with and without cells.•Nonlinear models showed a better fit than linear ones in biochemical monitoring.•The fitted models can be used in high-throughput upstream process development.•Variables absolute error was like those for other host cells covering alike ranges.