Improving the catalytic efficiency of thermostable Geobacillus stearothermophilus xylanase XT6 by single-amino acid substitution

• Published in: Journal of biochemistry (Tokyo) Vol. 167; no. 2; pp. 203 - 215
• Main Authors: Azouz, Rasha A M, Hegazy, Usama M, Said, Mahmoud M, Bassuiny, Roqaya I, Salem, Ahmed M, Fahmy, Afaf S
• Format: Journal Article
• Language: English
• Published: England Oxford University Press 01.02.2020
• Subjects: Amino Acid Substitution; Biocatalysis; Endo-1,4-beta Xylanases - chemistry; Endo-1,4-beta Xylanases - genetics; Endo-1,4-beta Xylanases - metabolism; Enzyme Stability; Geobacillus stearothermophilus - enzymology; Geobacillus stearothermophilus - genetics; High-Throughput Screening Assays; Substrate Specificity; Temperature; enzyme; structure–function relationship; biotechnology; genetic engineering; lignocellulose
• ISSN: 0021-924X; 1756-2651
• DOI: 10.1093/jb/mvz086

Abstract Directed evolution using error-prone polymerase chain reaction was employed in the current study to enhance the catalytic efficiency of a thermostable Geobacillus stearothermophilus xylanase XT6 parent. High-throughput screening identified two variants with enhanced activity. Sequencing analysis revealed the presence of a single-amino acid substitution (P209L or V161L) in each variant. The maximum activity of mutant V161L and P209L was at 85°C and 70°C, respectively. Both mutants exhibited maximum activity at pH 7. The thermal and alkaline tolerance of mutant V161L only were markedly improved. The two mutants were more resistant to ethanol inhibition than the parent. Substrate specificity of the two mutants was shifted from beechwood xylan to birchwood xylan. The potential of the two mutants to hydrolyze rice straw and sugarcane bagasse increased. Both turnover number (kcat) and catalytic efficiency (kcat/kM) increased 12.2- and 5.7-folds for variant P209L and 13- and 6.5-folds for variant V161L, respectively, towards birchwood xylan. Based on the previously published crystal structure of extracellular G. stearothermophilus xylanase XT6, V161L and P209L mutation locate on βα-loops. Conformational changes of the respective loops could potentiate the loop swinging, product release and consequently result in enhancement of the catalytic performance.