Hereditary Amyloidosis: Insights Into a Fibrinogen A Variant Protein

• Published in: Proteins, structure, function, and bioinformatics Vol. 92; no. 12; pp. 1366 - 1374
• Main Authors: Cattaneo, Elizabeth R., Gisonno, Romina A., Abba, Martín C., Santana, Marianela, Rosú, Silvana A., Nucifora, Elsa, Aguirre, María A., Giordani, María C., Tricerri, M. Alejandra, Ramella, Nahuel A.
• Format: Journal Article
• Language: English
• Published: Hoboken, USA John Wiley & Sons, Inc 01.12.2024; Wiley Subscription Services, Inc
• Subjects: Allografts; Amyloidosis; Bioinformatics; Diagnosis; diagnosis of amyloidosis; Fibrinogen; fibrinogen Aα amyloid variants; Gene sequencing; Genomic analysis; hereditary amyloidosis; Kidney transplantation; Pathogenicity; Pathogens; Protein structure; Proteins; Renal failure; Structural analysis; Whole genome sequencing; whole‐exome sequencing; hereditary amyloidosis; diagnosis of amyloidosis; whole‐exome sequencing; fibrinogen Aα amyloid variants
• ISSN: 0887-3585; 1097-0134; 1097-0134
• DOI: 10.1002/prot.26732

ABSTRACT Amyloidosis are a group of diseases in which soluble proteins aggregate and deposit in fibrillar conformation extracellularly in tissues. The effectiveness of therapeutic strategies depends on the specific protein involved, being crucial to accurately determine its nature. Moreover, following the diagnosis, the search for the mutation within relatives allows the clinical advice. Here we report the precise diagnosis and explored the possible reasons of the structural pathogenicity for a renal amyloidosis related to a fibrinogen Aα‐chain variant. Whole‐exome sequencing and GATK calling pipeline were leveraged to characterize the protein variant present in a patient with kidney failure. Bioinformatics strategies were applied to suggest potential explanations of the variants aggregation. Our pipeline allowed the identification of a single‐point variant of fibrinogen Aα‐chain, which opened the possibility of curative transplantation. In silico structural analysis suggested that the pathogenicity of the variant may be attributed to a heightened susceptibility to yield a peptide prone to deposit as an oligomer with a β‐sheet structure. Exploiting the comprehensive coverage of whole‐genome sequencing, we managed to fill a vacant stage in the diagnosis of hereditary amyloidosis and to stimulate the advancement in biomedicine.