Multivariate analysis of geographically diverse rice germplasm for genetic improvement of yield, dormancy and shattering-related traits

• Published in: Plant genetic resources: characterization and utilization Vol. 19; no. 2; pp. 144 - 152
• Main Authors: Deepika, K., Lavuri, Krishna, Rathod, Santosha, Yeshala, Chandra Mohan, Jukanti, Aravind Kumar, Narender Reddy, S., LV, Subba Rao, Badri, Jyothi
• Format: Journal Article
• Language: English
• Published: Cambridge Cambridge University Press 01.04.2021
• Subjects: Agricultural production; Cluster analysis; Clustering; Cultivars; Domestication; Dormancy; Flowering; Gene mapping; Genes; Genetic diversity; Genetic improvement; Genotypes; Germplasm; Heredity; Kurtosis; Multivariate analysis; Normal distribution; Physiology; Principal components analysis; Quantitative trait loci; Rice; Variance analysis; Yield; India
• ISSN: 1479-2621; 1479-263X
• DOI: 10.1017/S1479262121000186

Abstract A diverse set of 107 rice genotypes was evaluated for yield, shattering and dormancy traits. Analysis of variance revealed sizable variation while skewness and kurtosis values indicated near-normal distribution for most of the traits, thus quantitative nature controlled by many genes. A highly significant deviation from a normal distribution for dormancy and shattering % indicated their qualitative nature of inheritance. Four promising genotypes ‘IRGC1723’ (early with 65 days to flowering), ‘IRGC 11108’ and ‘RNR 15459’ (high grain number – 358 and low average shattering – <5%), ‘RNR 11718’ (high single plant yield – 56.73 g, low average shattering – <5% and dormancy period – 21 days) are identified. A significant positive correlation between shattering and dormancy confirms inter-relationship among domestication-related characteristics. The principal component analysis revealed the contribution of four PCs to maximum variability and hierarchical clustering grouped the genotypes into 18 divergent clusters. Five cultivars (Karimnagar Samba, Sheetal, PR 121, Pranahitha and Jagitial Samba) with a combination of low shattering ability (3.35–5.7%) and considerable dormancy period (13–20 days) falling in the same cluster can be used as donors for the improvement of rice genotypes with low shattering ability and incorporating a considerable period of dormancy so as to avoid pre-harvest sprouting due to delayed harvesting. Further, they can be crossed with ‘Pratyumna’ having less than 1 week dormancy period, a genotype of the cluster XVII with which they have a maximum genetic divergence of 51.4 and may serve as parents in the development of mapping populations for the identification of QTLs/genes for shattering and dormancy traits.