Environmental Sampling as a Low-Technology Method for Surveillance of Foot-and-Mouth Disease Virus in an Area of Endemicity

• Published in: Applied and environmental microbiology Vol. 84; no. 16
• Main Authors: Colenutt, Claire, Brown, Emma, Nelson, Noel, Wadsworth, Jemma, Maud, Jenny, Adhikari, Bishnu, Chapagain Kafle, Sharmila, Upadhyaya, Mukul, Kafle Pandey, Samjhana, Paton, David J, Sumption, Keith, Gubbins, Simon
• Format: Journal Article
• Language: English
• Published: United States American Society for Microbiology 15.08.2018
• Subjects: Contamination; Diagnostic systems; Disease transmission; Environment; Environmental monitoring; Foot & mouth disease; Livestock; Long-term effects; Methods; Outbreaks; Pathogens; Ribonucleic acid; RNA; Sampling; Sampling methods; Secretions; Spotlight; Surveillance; Technology; Veterinary medicine; Viruses; foot-and-mouth disease virus; foot-and-mouth disease; viral detection; environmental surveillance; FMD; rRT-PCR
• ISSN: 0099-2240; 1098-5336
• DOI: 10.1128/AEM.00686-18

Environmental sampling enables disease surveillance beyond regular investigation of observed clinical cases, extending data on the circulation of a pathogen in a specific area. Developing straightforward, low-technology methods suitable for use under field conditions is key to the inclusion of such approaches alongside traditional surveillance techniques. Foot-and-mouth disease virus (FMDV) is an economically important livestock pathogen, affecting cloven-hoofed livestock in many countries. Countries with FMDV face severe trade restrictions, and infections can have long-term effects on the productivity of affected animals. Environmental contamination by the virus in excretions and secretions from infected individuals promotes transmission but also presents an opportunity for noninvasive sample collection, facilitating diagnostic and surveillance activities. We present environmental sampling methods that have been tested in the Kathmandu Valley, Nepal, where FMDV is endemic. A total of nine sites were visited and sampled between November 2016 and November 2017. Environmental swabs collected from sites with reported outbreaks of FMD were used to demonstrate successful detection of FMDV RNA from the environment. The development of methods that can reliably detect FMDV RNA in the environment is significant, since this possibility extends the toolbox available for surveillance for this disease. Similar methods have already been deployed in the effort to eradicate polio, and with FMDV, such methods could easily be deployed in the event of an outbreak to provide additional resources for detection that would relieve pressure on veterinary services. The development of low-technology, straightforward surveillance methods such as these can support a robust response to outbreaks. Prompt confirmation and diagnosis of disease are key factors in controlling outbreaks. The development of sampling techniques to detect FMDV RNA from the environment will extend the tool kit available for the surveillance of this pathogen. The methods presented in this article broaden surveillance opportunities using accessible techniques. Pairing these methods with existing and novel diagnostic tests will improve the capability for rapid detection of outbreaks and implementation of timely interventions to control outbreaks. In areas of endemicity, these methods can be implemented to extend surveillance beyond the investigation of clinical cases, providing additional data for the assessment of virus circulation in specific areas.