Mapping of a novel locus Ra conferring extreme resistance against potato virus A in cultivated potato (Solanum tuberosum L.)
Key message The Ra extreme resistance against potato virus A was mapped to the upper of chromosome 4 in tetraploid potato. Potato virus A (PVA) is one of the major viruses affecting potato worldwide and can cause serious disease symptoms and yield losses. Previously, we determined that potato cultiv...
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Published in | Theoretical and applied genetics Vol. 137; no. 8; p. 198 |
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Main Authors | , , , , , , , , , , , , , |
Format | Journal Article |
Language | English |
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Springer Berlin Heidelberg
01.08.2024
Springer Nature B.V |
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Abstract | Key message
The Ra extreme resistance against potato virus A was mapped to the upper of chromosome 4 in tetraploid potato.
Potato virus A (PVA) is one of the major viruses affecting potato worldwide and can cause serious disease symptoms and yield losses. Previously, we determined that potato cultivar Barbara harbors
Ry
sto
(genotype:
Ryryryry
) and
Ra
(genotype:
Rararara
) that each independently confer extreme resistance to PVA. In this study, employing a combination of next-generation sequencing and bulked-segregant analysis, we further located this novel
Ra
on chromosome 4 using a tetraploid BC
1
potato population derived from a
Ry
-free progeny (
Rararararyryryry
) of Barbara (
RarararaRyryryry
) × F58050 (
rararararyryryry
). Using 29 insertion–deletion (InDel) markers spanning chromosome 4,
Ra
was delimited by the InDel markers M8-83 and M10-8 within a genetic interval of 1.46 cM, corresponding to a 1.86-Mb genomic region in the potato DM reference genome. The InDel marker M10-8, which is closely linked with the resistance against PVA in the
Ry
-free segregating populations, was then used to screen 43 selected
Ry
sto
-free tetraploid potato breeding clones. The phenotype to PVA was significantly correlated with the present/absent of the marker, albeit with a 9.3% false positive rate and a 14.0% false negative rate. These findings are of importance in furthering the cloning of
Ra
and employing the marker-assisted selection for PVA resistance. |
---|---|
AbstractList | The Ra extreme resistance against potato virus A was mapped to the upper of chromosome 4 in tetraploid potato. Potato virus A (PVA) is one of the major viruses affecting potato worldwide and can cause serious disease symptoms and yield losses. Previously, we determined that potato cultivar Barbara harbors Ry
(genotype: Ryryryry) and Ra (genotype: Rararara) that each independently confer extreme resistance to PVA. In this study, employing a combination of next-generation sequencing and bulked-segregant analysis, we further located this novel Ra on chromosome 4 using a tetraploid BC
potato population derived from a Ry-free progeny (Rararararyryryry) of Barbara (RarararaRyryryry) × F58050 (rararararyryryry). Using 29 insertion-deletion (InDel) markers spanning chromosome 4, Ra was delimited by the InDel markers M8-83 and M10-8 within a genetic interval of 1.46 cM, corresponding to a 1.86-Mb genomic region in the potato DM reference genome. The InDel marker M10-8, which is closely linked with the resistance against PVA in the Ry-free segregating populations, was then used to screen 43 selected Ry
-free tetraploid potato breeding clones. The phenotype to PVA was significantly correlated with the present/absent of the marker, albeit with a 9.3% false positive rate and a 14.0% false negative rate. These findings are of importance in furthering the cloning of Ra and employing the marker-assisted selection for PVA resistance. The Ra extreme resistance against potato virus A was mapped to the upper of chromosome 4 in tetraploid potato. Potato virus A (PVA) is one of the major viruses affecting potato worldwide and can cause serious disease symptoms and yield losses. Previously, we determined that potato cultivar Barbara harbors Rysto (genotype: Ryryryry) and Ra (genotype: Rararara) that each independently confer extreme resistance to PVA. In this study, employing a combination of next-generation sequencing and bulked-segregant analysis, we further located this novel Ra on chromosome 4 using a tetraploid BC1 potato population derived from a Ry-free progeny (Rararararyryryry) of Barbara (RarararaRyryryry) × F58050 (rararararyryryry). Using 29 insertion-deletion (InDel) markers spanning chromosome 4, Ra was delimited by the InDel markers M8-83 and M10-8 within a genetic interval of 1.46 cM, corresponding to a 1.86-Mb genomic region in the potato DM reference genome. The InDel marker M10-8, which is closely linked with the resistance against PVA in the Ry-free segregating populations, was then used to screen 43 selected Rysto-free tetraploid potato breeding clones. The phenotype to PVA was significantly correlated with the present/absent of the marker, albeit with a 9.3% false positive rate and a 14.0% false negative rate. These findings are of importance in furthering the cloning of Ra and employing the marker-assisted selection for PVA resistance.KEY MESSAGEThe Ra extreme resistance against potato virus A was mapped to the upper of chromosome 4 in tetraploid potato. Potato virus A (PVA) is one of the major viruses affecting potato worldwide and can cause serious disease symptoms and yield losses. Previously, we determined that potato cultivar Barbara harbors Rysto (genotype: Ryryryry) and Ra (genotype: Rararara) that each independently confer extreme resistance to PVA. In this study, employing a combination of next-generation sequencing and bulked-segregant analysis, we further located this novel Ra on chromosome 4 using a tetraploid BC1 potato population derived from a Ry-free progeny (Rararararyryryry) of Barbara (RarararaRyryryry) × F58050 (rararararyryryry). Using 29 insertion-deletion (InDel) markers spanning chromosome 4, Ra was delimited by the InDel markers M8-83 and M10-8 within a genetic interval of 1.46 cM, corresponding to a 1.86-Mb genomic region in the potato DM reference genome. The InDel marker M10-8, which is closely linked with the resistance against PVA in the Ry-free segregating populations, was then used to screen 43 selected Rysto-free tetraploid potato breeding clones. The phenotype to PVA was significantly correlated with the present/absent of the marker, albeit with a 9.3% false positive rate and a 14.0% false negative rate. These findings are of importance in furthering the cloning of Ra and employing the marker-assisted selection for PVA resistance. Key messageThe Ra extreme resistance against potato virus A was mapped to the upper of chromosome 4 in tetraploid potato.Potato virus A (PVA) is one of the major viruses affecting potato worldwide and can cause serious disease symptoms and yield losses. Previously, we determined that potato cultivar Barbara harbors Rysto (genotype: Ryryryry) and Ra (genotype: Rararara) that each independently confer extreme resistance to PVA. In this study, employing a combination of next-generation sequencing and bulked-segregant analysis, we further located this novel Ra on chromosome 4 using a tetraploid BC1 potato population derived from a Ry-free progeny (Rararararyryryry) of Barbara (RarararaRyryryry) × F58050 (rararararyryryry). Using 29 insertion–deletion (InDel) markers spanning chromosome 4, Ra was delimited by the InDel markers M8-83 and M10-8 within a genetic interval of 1.46 cM, corresponding to a 1.86-Mb genomic region in the potato DM reference genome. The InDel marker M10-8, which is closely linked with the resistance against PVA in the Ry-free segregating populations, was then used to screen 43 selected Rysto-free tetraploid potato breeding clones. The phenotype to PVA was significantly correlated with the present/absent of the marker, albeit with a 9.3% false positive rate and a 14.0% false negative rate. These findings are of importance in furthering the cloning of Ra and employing the marker-assisted selection for PVA resistance. Key message The Ra extreme resistance against potato virus A was mapped to the upper of chromosome 4 in tetraploid potato. Potato virus A (PVA) is one of the major viruses affecting potato worldwide and can cause serious disease symptoms and yield losses. Previously, we determined that potato cultivar Barbara harbors Ry sto (genotype: Ryryryry ) and Ra (genotype: Rararara ) that each independently confer extreme resistance to PVA. In this study, employing a combination of next-generation sequencing and bulked-segregant analysis, we further located this novel Ra on chromosome 4 using a tetraploid BC 1 potato population derived from a Ry -free progeny ( Rararararyryryry ) of Barbara ( RarararaRyryryry ) × F58050 ( rararararyryryry ). Using 29 insertion–deletion (InDel) markers spanning chromosome 4, Ra was delimited by the InDel markers M8-83 and M10-8 within a genetic interval of 1.46 cM, corresponding to a 1.86-Mb genomic region in the potato DM reference genome. The InDel marker M10-8, which is closely linked with the resistance against PVA in the Ry -free segregating populations, was then used to screen 43 selected Ry sto -free tetraploid potato breeding clones. The phenotype to PVA was significantly correlated with the present/absent of the marker, albeit with a 9.3% false positive rate and a 14.0% false negative rate. These findings are of importance in furthering the cloning of Ra and employing the marker-assisted selection for PVA resistance. |
ArticleNumber | 198 |
Author | Chen, Jiaru Zheng, Jie Nie, Xianzhou Yang, Manhua Gardner, Kyle Nie, Bihua Li, Jingcai Chen, Ruhao Song, Botao Tu, Zhen Ma, Hui Huang, Wei Li, Jiana Dong, Jianke |
Author_xml | – sequence: 1 givenname: Wei surname: Huang fullname: Huang, Wei organization: National Key Laboratory for Germplasm Innovation & Utilization of Horticultural Crops, Key Laboratory of Potato Biology and Biotechnology, Ministry of Agriculture and Rural Affairs, Huazhong Agricultural University, Wuhan Academy of Agricultural Sciences – sequence: 2 givenname: Jie surname: Zheng fullname: Zheng, Jie organization: National Key Laboratory for Germplasm Innovation & Utilization of Horticultural Crops, Key Laboratory of Potato Biology and Biotechnology, Ministry of Agriculture and Rural Affairs, Huazhong Agricultural University – sequence: 3 givenname: Bihua orcidid: 0000-0002-8664-9323 surname: Nie fullname: Nie, Bihua email: nbihua@mail.hzau.edu.cn organization: National Key Laboratory for Germplasm Innovation & Utilization of Horticultural Crops, Key Laboratory of Potato Biology and Biotechnology, Ministry of Agriculture and Rural Affairs, Huazhong Agricultural University – sequence: 4 givenname: Jiana surname: Li fullname: Li, Jiana organization: National Key Laboratory for Germplasm Innovation & Utilization of Horticultural Crops, Key Laboratory of Potato Biology and Biotechnology, Ministry of Agriculture and Rural Affairs, Huazhong Agricultural University – sequence: 5 givenname: Ruhao surname: Chen fullname: Chen, Ruhao organization: National Key Laboratory for Germplasm Innovation & Utilization of Horticultural Crops, Key Laboratory of Potato Biology and Biotechnology, Ministry of Agriculture and Rural Affairs, Huazhong Agricultural University – sequence: 6 givenname: Xianzhou surname: Nie fullname: Nie, Xianzhou organization: Fredericton Research and Development Centre, Agriculture and Agri-Food Canada – sequence: 7 givenname: Zhen surname: Tu fullname: Tu, Zhen organization: National Key Laboratory for Germplasm Innovation & Utilization of Horticultural Crops, Key Laboratory of Potato Biology and Biotechnology, Ministry of Agriculture and Rural Affairs, Huazhong Agricultural University – sequence: 8 givenname: Kyle surname: Gardner fullname: Gardner, Kyle organization: Fredericton Research and Development Centre, Agriculture and Agri-Food Canada – sequence: 9 givenname: Jiaru surname: Chen fullname: Chen, Jiaru organization: National Key Laboratory for Germplasm Innovation & Utilization of Horticultural Crops, Key Laboratory of Potato Biology and Biotechnology, Ministry of Agriculture and Rural Affairs, Huazhong Agricultural University – sequence: 10 givenname: Manhua surname: Yang fullname: Yang, Manhua organization: National Key Laboratory for Germplasm Innovation & Utilization of Horticultural Crops, Key Laboratory of Potato Biology and Biotechnology, Ministry of Agriculture and Rural Affairs, Huazhong Agricultural University – sequence: 11 givenname: Jingcai surname: Li fullname: Li, Jingcai organization: School of Life Sciences, Huanggang Normal College – sequence: 12 givenname: Jianke surname: Dong fullname: Dong, Jianke organization: National Key Laboratory for Germplasm Innovation & Utilization of Horticultural Crops, Key Laboratory of Potato Biology and Biotechnology, Ministry of Agriculture and Rural Affairs, Huazhong Agricultural University – sequence: 13 givenname: Hui surname: Ma fullname: Ma, Hui organization: Zhangjiakou Academy of Agriculture Sciences – sequence: 14 givenname: Botao surname: Song fullname: Song, Botao organization: National Key Laboratory for Germplasm Innovation & Utilization of Horticultural Crops, Key Laboratory of Potato Biology and Biotechnology, Ministry of Agriculture and Rural Affairs, Huazhong Agricultural University |
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The Ra extreme resistance against potato virus A was mapped to the upper of chromosome 4 in tetraploid potato.
Potato virus A (PVA) is one of the... The Ra extreme resistance against potato virus A was mapped to the upper of chromosome 4 in tetraploid potato. Potato virus A (PVA) is one of the major viruses... Key messageThe Ra extreme resistance against potato virus A was mapped to the upper of chromosome 4 in tetraploid potato.Potato virus A (PVA) is one of the... |
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SubjectTerms | Agriculture Biochemistry Biomedical and Life Sciences Biotechnology Chromosome 4 Chromosome deletion Chromosome Mapping Chromosomes Chromosomes, Plant - genetics Crop yield Cultivars Disease resistance Disease Resistance - genetics Gene mapping Genetic Markers Genotype Genotypes INDEL Mutation Life Sciences Marker-assisted selection Next-generation sequencing Original Article Phenotype Phenotypes Plant Biochemistry Plant Breeding Plant Breeding/Biotechnology Plant Diseases - genetics Plant Diseases - virology Plant Genetics and Genomics Plant virus diseases Plant viruses Potatoes Potyvirus - pathogenicity Solanum tuberosum Solanum tuberosum - genetics Solanum tuberosum - virology Tetraploidy Viruses |
Title | Mapping of a novel locus Ra conferring extreme resistance against potato virus A in cultivated potato (Solanum tuberosum L.) |
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