Proteomic approaches for generating comprehensive protein interaction maps
The availability of complete genome sequences of numerous model organisms has initiated the development of new approaches in biological research to complement conventional biochemistry and genetics. In this context, high-throughput methods for detecting protein interactions, such as mass spectrometr...
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| Published in | Targets Vol. 2; no. 3; pp. 85 - 92 |
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| Main Authors | , , |
| Format | Book Review Journal Article |
| Language | English |
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Elsevier B.V
01.06.2003
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| Abstract | The availability of complete genome sequences of numerous model organisms has initiated the development of new approaches in biological research to complement conventional biochemistry and genetics. In this context, high-throughput methods for detecting protein interactions, such as mass spectrometry and yeast two-hybrid assays, have produced vast amounts of data that can be exploited to infer protein function and regulation. In this review, we explore different genome-wide protein interaction studies and comment on their extrapolation towards understanding protein functions. It is likely that improvements of these approaches, together with more sophisticated databases and the invention of novel technologies, will help to decipher the complex interactions among proteins and to integrate interacting proteins into existing and novel cellular pathways. |
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| AbstractList | The availability of complete genome sequences of numerous model organisms has initiated the development of new approaches in biological research to complement conventional biochemistry and genetics. In this context, high-throughput methods for detecting protein interactions, such as mass spectrometry and yeast two-hybrid assays, have produced vast amounts of data that can be exploited to infer protein function and regulation. In this review, we explore different genome-wide protein interaction studies and comment on their extrapolation towards understanding protein functions. It is likely that improvements of these approaches, together with more sophisticated databases and the invention of novel technologies, will help to decipher the complex interactions among proteins and to integrate interacting proteins into existing and novel cellular pathways. The availability of complete genome sequences of numerous model organisms has initiated the development of new approaches in biological research to complement conventional biochemistry and genetics. In this context, high-throughout methods for detecting protein interactions, such as mass spectrometry and yeast two-hybrid assays, have produced vast amounts of data that can be exploited to infer protein function and regulation. In this review, we explore different genome-wide protein interaction studies and comment on their extrapolation towards understanding protein functions. It is likely that improvements of these approaches, together with more sophisticated databases and the invention of novel technologies, will help to decipher the complex interactions among proteins and to integrate interacting proteins into existing and novel cellular pathways. |
| Author | Fetchko, Michael Stagljar, Igor Auerbach, Daniel |
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| Keywords | protein interactions proteome chips proteomics Techniques & Methods Pharmaceutical Science yeast two-hybrid mass spectrometry Genetics Biochemistry protein interaction maps Drug Discovery |
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| References | Tong (BIB32) 2001; 294 Finley, Brent (BIB24) 1994; 91 Goffeau (BIB4) 1996; 274 Zhu (BIB22) 2000; 26 McCraith (BIB12) 2000; 97 MacBeath, Schreiber (BIB27) 2000; 289 Hyman (BIB10) 2002; 419 Ho (BIB19) 2002; 415 (BIB5) 1998; 282 (BIB2) 2001; 409 Kumar (BIB34) 2002; 16 Wittke (BIB30) 1999; 10 Hughes (BIB33) 2000; 102 Fleischmann (BIB1) 1995; 269 Stagljar, Fields (BIB28) 2002; 27 Boute (BIB31) 2002; 23 Waterston (BIB11) 2002; 420 Zhu (BIB20) 2001; 293 Hall (BIB9) 2002; 419 Shaywitz (BIB35) 2002; 1 Venter (BIB3) 2001; 291 Uetz (BIB16) 2000; 403 Ito (BIB17) 2001; 98 Stagljar (BIB29) 1998; 95 Gardner (BIB8) 2002; 419 Adams (BIB6) 2000; 287 Rain (BIB14) 2001; 409 (BIB7) 2000; 408 Fields, Song (BIB23) 1989; 340 Walhout (BIB15) 2000; 287 Gavin (BIB18) 2002; 415 Link (BIB26) 1999; 17 Auerbach (BIB25) 2002; 2 Flajolet (BIB13) 2000; 242 Duan (BIB36) 2002; 1 von Mering (BIB21) 2002; 417 Flajolet (10.1016/S1477-3627(03)02316-X_BIB13) 2000; 242 Ho (10.1016/S1477-3627(03)02316-X_BIB19) 2002; 415 (10.1016/S1477-3627(03)02316-X_BIB5) 1998; 282 McCraith (10.1016/S1477-3627(03)02316-X_BIB12) 2000; 97 Fields (10.1016/S1477-3627(03)02316-X_BIB23) 1989; 340 Kumar (10.1016/S1477-3627(03)02316-X_BIB34) 2002; 16 Duan (10.1016/S1477-3627(03)02316-X_BIB36) 2002; 1 Rain (10.1016/S1477-3627(03)02316-X_BIB14) 2001; 409 Gavin (10.1016/S1477-3627(03)02316-X_BIB18) 2002; 415 Uetz (10.1016/S1477-3627(03)02316-X_BIB16) 2000; 403 (10.1016/S1477-3627(03)02316-X_BIB7) 2000; 408 Hall (10.1016/S1477-3627(03)02316-X_BIB9) 2002; 419 Boute (10.1016/S1477-3627(03)02316-X_BIB31) 2002; 23 (10.1016/S1477-3627(03)02316-X_BIB2) 2001; 409 Gardner (10.1016/S1477-3627(03)02316-X_BIB8) 2002; 419 Waterston (10.1016/S1477-3627(03)02316-X_BIB11) 2002; 420 Shaywitz (10.1016/S1477-3627(03)02316-X_BIB35) 2002; 1 Tong (10.1016/S1477-3627(03)02316-X_BIB32) 2001; 294 Zhu (10.1016/S1477-3627(03)02316-X_BIB20) 2001; 293 Stagljar (10.1016/S1477-3627(03)02316-X_BIB29) 1998; 95 von Mering (10.1016/S1477-3627(03)02316-X_BIB21) 2002; 417 Finley (10.1016/S1477-3627(03)02316-X_BIB24) 1994; 91 Ito (10.1016/S1477-3627(03)02316-X_BIB17) 2001; 98 Walhout (10.1016/S1477-3627(03)02316-X_BIB15) 2000; 287 MacBeath (10.1016/S1477-3627(03)02316-X_BIB27) 2000; 289 Hyman (10.1016/S1477-3627(03)02316-X_BIB10) 2002; 419 Link (10.1016/S1477-3627(03)02316-X_BIB26) 1999; 17 Stagljar (10.1016/S1477-3627(03)02316-X_BIB28) 2002; 27 Venter (10.1016/S1477-3627(03)02316-X_BIB3) 2001; 291 Wittke (10.1016/S1477-3627(03)02316-X_BIB30) 1999; 10 Fleischmann (10.1016/S1477-3627(03)02316-X_BIB1) 1995; 269 Goffeau (10.1016/S1477-3627(03)02316-X_BIB4) 1996; 274 Auerbach (10.1016/S1477-3627(03)02316-X_BIB25) 2002; 2 Hughes (10.1016/S1477-3627(03)02316-X_BIB33) 2000; 102 Zhu (10.1016/S1477-3627(03)02316-X_BIB22) 2000; 26 Adams (10.1016/S1477-3627(03)02316-X_BIB6) 2000; 287 |
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| Title | Proteomic approaches for generating comprehensive protein interaction maps |
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