Anesthesia-free Heartbeat Measurements in Freely Moving Zebrafish

• Published in: Journal of visualized experiments no. 218
• Main Authors: Machikhin, Alexander, Slavin, Artem, Guryleva, Anastasia, Krylov, Viacheslav
• Format: Journal Article
• Language: English
• Published: United States 18.04.2025
• Subjects: Animals; Heart Rate - physiology; Machine Learning; Photoplethysmography - methods; Zebrafish - physiology
• ISSN: 1940-087X
• DOI: 10.3791/68145

Zebrafish (Danio rerio) is a widely used model organism in physiological, pharmacological, and toxicological research due to its genetic similarity to humans and transparent embryonic stage, which facilitates non-invasive cardiovascular studies. However, current methods for heart rate assessment in zebrafish often rely on anesthesia to immobilize the subject, introducing physiological alterations that compromise data accuracy and reproducibility. This study presents a novel, anesthesia-free technique for measuring heartbeat in freely moving zebrafish larvae, addressing a critical limitation in cardiovascular research. The proposed approach integrates shortwave-infrared imaging with machine-learning-based heart tracking, allowing for precise and continuous cardiac activity monitoring in non-immobilized specimens. A convolutional neural network was trained to detect the heart region, and a photoplethysmographic signal was extracted from image sequences to determine heart rate. Experimental validation demonstrated the method's reliability and consistency across multiple test conditions. A key benefit of the methodology is its ability to preserve the natural physiological state of zebrafish, minimizing stress-induced artifacts. This non-invasive, label-free technique offers significant advantages for studying cardiovascular physiology, drug cardiotoxicity, and environmental toxicology, expanding the potential applications of zebrafish as a model for biomedical research.