Rhizosphere bacteriome of the medicinal plant Sapindus saponaria L. revealed by pyrosequencing

• Published in: Genetics and molecular research Vol. 15; no. 4
• Main Authors: Garcia, A, Polonio, J C, Polli, A D, Santos, C M, Rhoden, S A, Quecine, M C, Azevedo, J L, Pamphile, J A
• Format: Journal Article
• Language: English
• Published: Brazil 03.11.2016
• Subjects: Bacteria - classification; Biodiversity; Microbiota; Phylogeny; Plants, Medicinal - genetics; Plants, Medicinal - microbiology; Rhizosphere; RNA, Ribosomal, 16S - genetics; Sapindus - genetics; Sapindus - microbiology; Sequence Analysis, DNA - methods; Soil Microbiology; Temperature
• ISSN: 1676-5680; 1676-5680
• DOI: 10.4238/gmr15049020

Sapindus saponaria L. of Sapindaceae family is popularly known as soldier soap and is found in Central and South America. A study of such medicinal plants might reveal a more complex diversity of microorganisms as compared to non-medicinal plants, considering their metabolic potential and the chemical communication between their natural microbiota. Rhizosphere is a highly diverse microbial habitat with respect to both the diversity of species and the size of the community. Rhizosphere bacteriome associated with medicinal plant S. saponaria is still poorly known. The objective of this study was to assess the rhizosphere microbiome of the medicinal plant S. saponaria using pyrosequencing, a culture-independent approach that is increasingly being used to estimate the number of bacterial species present in different environments. In their rhizosphere microbiome, 26 phyla were identified from 5089 sequences of 16S rRNA gene, with a predominance of Actinobacteria (33.54%), Acidobacteria (22.62%), and Proteobacteria (24.72%). The rarefaction curve showed a linear increase, with 2660 operational taxonomic units at 3% distance sequence dissimilarity, indicating that the rhizosphere microbiome associated with S. saponaria was highly diverse with groups of bacteria important for soil management, which could be further exploited for agricultural and biotechnological purposes.