Calmodulin triggers activity-dependent rRNA biogenesis via interaction with DDX21

• Published in: The Journal of neuroscience Vol. 44; no. 35; p. e1841232024
• Main Authors: Yang, Jia-Lin, Sun, Xue, Shi, Jun-Xiu, Cui, Qing-Xu, Cao, Xin-Yu, Wang, Kai-Tuo, An, Ming-Xin, Wu, Si-Jin, Yang, Yong-Liang, Sun, Hong-Zan, Zhao, Wei-Dong
• Format: Journal Article
• Language: English
• Published: United States Society for Neuroscience 28.08.2024
• Subjects: Biosynthesis; Calcium influx; Calcium ions; Calcium-binding protein; Calmodulin; Chemical synthesis; DNA helicase; DNA-directed RNA polymerase; High-throughput screening; Hippocampus; Neurons; Nucleoli; Protein biosynthesis; Protein synthesis; Proteins; Ribonucleic acid; Ribosomal DNA; RNA; RNA helicase; RNA polymerase; rRNA; Synaptic plasticity
• ISSN: 0270-6474; 1529-2401; 1529-2401
• DOI: 10.1523/JNEUROSCI.1841-23.2024

Protein synthesis in response to neuronal activity, known as activity-dependent translation, is critical for synaptic plasticity and memory formation. However, the signaling cascades that couple neuronal activity to the translational events remains elusive. In this study, we identified the role of calmodulin (CaM), a conserved Ca -binding protein, in rRNA biogenesis in neurons. We found the CaM-regulated rRNA synthesis is Ca -dependent and necessary for nascent protein synthesis and axon growth in hippocampal neurons. Mechanistically, CaM interacts with nucleolar DDX21 in a Ca -dependent manner to regulate nascent rRNA transcription within nucleoli. We further found CaM alters the conformation of DDX21 to liberate the DDX21-sequestered RPA194, the catalytic subunit of RNA polymerase I, to facilitate transcription of rDNA. Using high-throughput screening, we identified the small molecules Batefenterol and Indacaterol that attenuate the CaM-DDX21 interaction and suppress nascent rRNA synthesis and axon growth in hippocampal neurons. These results unveiled the previously unrecognized role of CaM as a messenger to link the activity-induced Ca influx to the nucleolar events essential for protein synthesis. We thus identified the ability of CaM to transmit information to the nucleoli of neurons in response to stimulation. Protein synthesis in response to neuronal activity, known as activity-dependent translation, is critical for synaptic plasticity and long-term memory formation. In this study, we identify the novel role of calmodulin (CaM), a highly conserved Ca -binding protein, which is well-known by regulating myriad vital biological processes, in activity-dependent translation by regulating rRNA synthesis in neurons. We find that CaM can shuttle into the nucleolus upon depolarization and modulate the activity-induced de novo rRNA biogenesis, which is associated with ribosome assembly and protein synthesis in neurons. Mechanistically, CaM interacts with DDX21, an RNA helicase directly associated with Pol I subunit, to regulate the transcription of rDNA. Our study demonstrates CaM as a messenger linking neuronal activity to ribosome-dependent protein biosynthesis.