Identification of a de novo LRP1 mutation in a Saudi family with Tetralogy of Fallot

• Published in: Gene Vol. 851; p. 146909
• Main Authors: Alrayes, Nuha, Mallah, Bayan A, Issa, Noha M., Banaganapalli, Babajan, Ahmad Shaik, Noor, Nasser, Khalidah K., Alshehri, Bandar Ali, Bhuiyan, Zahurul A., Bdier, Amnah Y., Al-Aama, Jumana Y.
• Format: Journal Article
• Language: English
• Published: Elsevier B.V 30.01.2023
• Subjects: VEP; SIFT; BNP; LV; PVR; QMEAN; RVOT; SHF; VCFS; CNVs; GME; GTEx; FGF; VSD; CMR; TOF; RA; TGA; MAF; CoA; AV; FFATHMM; CNC; NGS; PCR; A; CADD; C; RV; WES; FHF; G; ALGS; KAUH; SVM; PDA; ENU; ASD; T; SHGP; miRNA; GMQE; OFT; M-CAP; PolyPhen; SV; VEGF; ECG; EDTA; TA; MGI; LA; CHD
• ISSN: 0378-1119; 1879-0038
• DOI: 10.1016/j.gene.2022.146909

[Display omitted] •A novel heterozygous de novo mutation in LRP1 was identified.•LRP1 variant was predicted to be pathogenic, resulting in potential changes in the properties, stability and the structure of the protein.•The findings in this study postulate that LRP1 variant has a role in TOF pathogenesis and facilitate accurate diagnosis as well as the understanding of underlying molecular mechanisms and pathophysiology of the disease.•High throughput genetic technologies and bioinformatic tools have improved the discovery of many implicated genes related to congenital heart defects (CHD) and TOF. Tetralogy of Fallot (TOF) is a rare, complex congenital heart defect caused by genetic and environmental interactions that results in abnormal heart development during the early stages of pregnancy. Genetic basis of TOF in Saudi populations is not yet studied. Therefore, the objective of this study is to screen for the molecular defects causing TOF in Saudi patients. A family with non-syndromic TOF was recruited from the Western region of Saudi Arabia. Whole exome sequencing (WES) was performed on the proband and her parents. The identified candidate variant was verified by sanger sequencing. Also, different computational biology tools were used to figure out how candidate variants affect the structure and function of candidate protein involved in TOF. A novel heterozygous de novo mutation in LRP1 (p. G3311D) gene was identified in the index case. Also, this variant was absent in the in-house exome sequencing data of 80 healthy Saudi individuals. This variant was predicted to be likely pathogenic, as it negatively affects the biophysical chemical properties and stability of the protein. Furthermore, functional biology data from knock out mouse models confirms that molecular defects in LRP1 gene leads to cardiac defects and lethality. This variant was not previously reported in both Arab and global population genetic databases. The findings in this study postulate that the LRP1 variant has a role in TOF pathogenesis and facilitate accurate diagnosis as well as the understanding of underlying molecular mechanisms and pathophysiology of the disease.