HUP-ML: Human Proteome Markup Language for Proteomics Database

We have proposed an XML format, HUP-ML (Human Proteome Markup Language), for proteomics database to exchange proteome data among researchers and to accelerate their collaboration. HUP-ML data model is proteome-analysis-oriented so as to incorporate such information as sample source, details of sampl...

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Bibliographic Details
Published inJournal of the Mass Spectrometry Society of Japan Vol. 51; no. 5; pp. 542 - 549
Main Authors KAMIJO, Ken'ichi, MIZUGUCHI, Hironori, KENMOCHI, Akihisa, SATO, Masao, TAKAKI, Yoko, TSUGITA, Akira
Format Journal Article
LanguageJapanese
English
Published The Mass Spectrometry Society of Japan 2003
Subjects
Bioinformatics
Proteomics
XML (Extensible Markup Language)
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Summary:We have proposed an XML format, HUP-ML (Human Proteome Markup Language), for proteomics database to exchange proteome data among researchers and to accelerate their collaboration. HUP-ML data model is proteome-analysis-oriented so as to incorporate such information as sample source, details of sample preparation, 2-D gel electrophoresis images, spot identification, amino acid sequences, MS spectrum data, and so on. We have developed prototypes of HUP-ML Editor and web-based database system as a tool for creating HUP-ML documents and a platform for sharing HUP-ML documents, respectively.
ISSN:1340-8097
1880-4225
DOI:10.5702/massspec.51.542