EndoNet: A Multiscale Deep Learning Framework for Multiple Gastrointestinal Disease Classification via Endoscopic Images

• Published in: Diagnostics (Basel) Vol. 15; no. 16; p. 2009
• Main Authors: Attallah, Omneya, Aslan, Muhammet Fatih, Sabanci, Kadir
• Format: Journal Article
• Language: English
• Published: Basel MDPI AG 11.08.2025; MDPI
• Subjects: Accuracy; Algorithms; Architecture; Classification; Datasets; Decision support systems; Deep learning; Disease; Endoscopy; Feature selection; Literature reviews; Quality of life; Success
• ISSN: 2075-4418; 2075-4418
• DOI: 10.3390/diagnostics15162009

Background: Gastrointestinal (GI) disorders present significant healthcare challenges, requiring rapid, accurate, and effective diagnostic methods to improve treatment outcomes and prevent complications. Wireless capsule endoscopy (WCE) is an effective tool for diagnosing GI abnormalities; however, precisely identifying diverse lesions with similar visual patterns remains difficult. Methods: Many existing computer-aided diagnostic (CAD) systems rely on manually crafted features or single deep learning (DL) models, which often fail to capture the complex and varied characteristics of GI diseases. In this study, we proposed “EndoNet,” a multi-stage hybrid DL framework for eight-class GI disease classification using WCE images. Features were extracted from two different layers of three pre-trained convolutional neural networks (CNNs) (Inception, Xception, ResNet101), with both inter-layer and inter-model feature fusion performed. Dimensionality reduction was achieved using Non-Negative Matrix Factorization (NNMF), followed by selection of the most informative features via the Minimum Redundancy Maximum Relevance (mRMR) method. Results: Two datasets were used to evaluate the performance of EndoNer, including Kvasir v2 and HyperKvasir. Classification using seven different Machine Learning algorithms achieved a maximum accuracy of 97.8% and 98.4% for Kvasir v2 and HyperKvasir datasets, respectively. Conclusions: By integrating transfer learning with feature engineering, dimensionality reduction, and feature selection, EndoNet provides high accuracy, flexibility, and interpretability. This framework offers a powerful and generalizable artificial intelligence solution suitable for clinical decision support systems.