Genome-wide RNA-seq Analysis of Differentially Expressed Transcription Factor Genes Against Bacterial Leaf Pustule in Soybean

• Published in: Plant breeding and biotechnology pp. 197 - 207
• Main Authors: 김길현, 강양재, 심상례, 서민정, 백성범, 이점호, 박상구, 전태환, 문중경, 이석하, 박장환
• Format: Journal Article
• Language: English
• Published: 한국육종학회 30.09.2015
• Subjects: 농학
• ISSN: 2287-9358; 2287-9366
• DOI: 10.9787/PBB.2015.3.3.197

Bacterial leaf pustule (BLP) caused by Xanthomonas axonopodis pv. glycines (Xag) is a serious disease in soybean. To investigate the role of transcription factors (TFs) in plant defense mechanisms under Xag treatment, soybean near-isogenic lines (NILs) carrying BLP-susceptible and BLP-resistant allele were analyzed by RNA-seq. A total of 2,415 differentially expressed genes were identified at 0, 6, and 12 hr after Xag infection. Using SoyDB and SoybeanTFDB (soybean TF databases), a total of 351 differentially expressed TF genes were identified, of which 80% were top ten major TF families. Among 351 TF genes, 263 and 40 were up-regulated and down-regulated, repectively, in BLP-resistant NIL compared to that in BLP-susceptible NIL at the three time points (0, 6, and 12 hr) after Xag infection. The rest 48 TF genes were either up-regulated or down-regulated at each time period in BLP-resistant NIL. Most TF genes were highly up-regulated in the BLP-resistant NIL at 0 hr. Additionally, cis-regulatory elements (CREs) involving in regulation of stress-responsive transcription, ABRE, G-box, MYBR, MYCR, and W-box were investigated. A total of 1,092 downstream genes were identified. Our results will improve the understanding on how plant immunity occurs via TFs and CREs. KCI Citation Count: 0