Myelin water imaging from multi-echo T 2 MR relaxometry data using a joint sparsity constraint

• Published in: NeuroImage (Orlando, Fla.) Vol. 219; p. 117014
• Main Authors: Nagtegaal, Martijn, Koken, Peter, Amthor, Thomas, de Bresser, Jeroen, Mädler, Burkhard, Vos, Frans, Doneva, Mariya
• Format: Journal Article
• Language: English
• Published: United States Elsevier Limited 01.10.2020
• Subjects: Algorithms; Brain - diagnostic imaging; Demyelination; Humans; Image Processing, Computer-Assisted - methods; Magnetic resonance imaging; Magnetic Resonance Imaging - methods; Mapping; Methods; Models, Neurological; Multiple sclerosis; Myelin; Myelin Sheath; Noise; Normal distribution; Parameter estimation; Principal components analysis; Sparsity; Substantia alba; Translation; Water; Joint sparsity constraint; Myelin water fraction; T relaxometry; Demyelination
• ISSN: 1053-8119; 1095-9572
• DOI: 10.1016/j.neuroimage.2020.117014

Demyelination is the key pathological process in multiple sclerosis (MS). The extent of demyelination can be quantified with magnetic resonance imaging by assessing the myelin water fraction (MWF). However, long computation times and high noise sensitivity hinder the translation of MWF imaging to clinical practice. In this work, we introduce a more efficient and noise robust method to determine the MWF using a joint sparsity constraint and a pre-computed B -T dictionary. A single component analysis with this dictionary is used in an initial step to obtain a B map. The T distribution is then determined from a reduced dictionary corresponding to the estimated B map using a combination of a non-negativity and a joint sparsity constraint. The non-negativity constraint ensures that a feasible solution with non-negative contribution of each T component is obtained. The joint sparsity constraint restricts the T distribution to a small set of T relaxation times shared between all voxels and reduces the noise sensitivity. The applied Sparsity Promoting Iterative Joint NNLS (SPIJN) algorithm can be implemented efficiently, reducing the computation time by a factor of 50 compared to the commonly used regularized non-negative least squares algorithm. The proposed method was validated in simulations and in 8 healthy subjects with a 3D multi-echo gradient- and spin echo scan at 3 ​T. In simulations, the absolute error in the MWF decreased from 0.031 to 0.013 compared to the regularized NNLS algorithm for SNR ​= ​250. The in vivo results were consistent with values reported in literature and improved MWF-quantification was obtained especially in the frontal white matter. The maximum standard deviation in mean MWF in different regions of interest between subjects was smaller for the proposed method (0.0193) compared to the regularized NNLS algorithm (0.0266). In conclusion, the proposed method for MWF estimation is less computationally expensive and less susceptible to noise compared to state of the art methods. These improvements might be an important step towards clinical translation of MWF measurements.