The switch from early to late transcription in phage GA-1: characterization of the regulatory protein p4G

• Published in: Journal of molecular biology Vol. 290; no. 5; pp. 917 - 928
• Main Authors: Horcajadas, J A, Monsalve, M, Rojo, F, Salas, M
• Format: Journal Article
• Language: English
• Published: England 30.07.1999
• Subjects: Amino Acid Sequence; Bacillus Phages - genetics; Base Sequence; Binding Sites; Cloning, Molecular; Dimerization; DNA - chemistry; DNA - genetics; DNA - metabolism; DNA Footprinting; DNA-Binding Proteins - genetics; DNA-Binding Proteins - isolation & purification; DNA-Binding Proteins - metabolism; DNA-Directed RNA Polymerases - metabolism; Gene Expression Regulation, Viral; Genes, Viral - genetics; Molecular Sequence Data; Osmolar Concentration; Promoter Regions, Genetic - genetics; Repressor Proteins - antagonists & inhibitors; Repressor Proteins - metabolism; Sequence Homology, Amino Acid; Transcription Factors - genetics; Transcription Factors - isolation & purification; Transcription Factors - metabolism; Transcription, Genetic - genetics; Viral Proteins - genetics; Viral Proteins - isolation & purification; Viral Proteins - metabolism
• ISSN: 0022-2836
• DOI: 10.1006/jmbi.1999.2932

The transcription program of the Bacillus phage GA-1, a distant relative of phage Phi29, has been studied. Transcription of the GA-1 genome occurred in two stages, early and late. Early genes were expressed from two promoters equivalent to the Phi29 A2b and A2c promoters, whereas late transcription started at a site equivalent to the Phi29 late A3 promoter. The activity of the GA-1 early A2b and A2c promoters diminished 10 minutes after infection, a time at which expression of the late promoter increased significantly. The switch from early to late transcription required protein synthesis, suggesting the need for viral protein(s). An open reading frame was found in the GA-1 genome coding for a protein showing a 53 % similarity to Phi29 regulatory protein p4, and was named p4G. In Phi29, protein p4 represses the early A2b and A2c promoters and activates the late A3 promoter by recruiting RNA polymerase to it. A binding site for protein p4Gwas localized upstream from the GA-1 late A3 promoter, overlapping with the early A2b promoter. In vitro, protein p4Gprevented the binding of RNA polymerase to the GA-1 early A2b promoter but, unlike in Phi29, had no effect on the expression of the late A3 promoter: RNA polymerase could efficiently bind and initiate transcription from the A3 promoter in the absence of protein p4G. Therefore, activation of late transcription occurs differently in GA-1 and Phi29. We propose that protein p4Gis an anti-repressor which inhibits the binding to the late promoter of an unknown repressor factor present in the host strain.