Automatic inference of indexing rules for MEDLINE

• Published in: BMC bioinformatics Vol. 9; no. S11; p. S11
• Main Authors: Névéol, Aurélie, Shooshan, Sonya E, Claveau, Vincent
• Format: Journal Article
• Language: English
• Published: England BioMed Central Ltd 19.11.2008; BioMed Central; BMC
• Subjects: Abstracting and Indexing as Topic - methods; Algorithms; Artificial Intelligence; BASIC BIOLOGICAL SCIENCES; Biochemistry & Molecular Biology; Biotechnology & Applied Microbiology; Mathematical & Computational Biology; Medical Subject Headings; MEDLINE; Natural Language Processing; Programming Languages
• ISSN: 1471-2105; 1471-2105
• DOI: 10.1186/1471-2105-9-S11-S11

Indexing is a crucial step in any information retrieval system. In MEDLINE, a widely used database of the biomedical literature, the indexing process involves the selection of Medical Subject Headings in order to describe the subject matter of articles. The need for automatic tools to assist MEDLINE indexers in this task is growing with the increasing number of publications being added to MEDLINE. In this paper, we describe the use and the customization of Inductive Logic Programming (ILP) to infer indexing rules that may be used to produce automatic indexing recommendations for MEDLINE indexers. Our results show that this original ILP-based approach outperforms manual rules when they exist. In addition, the use of ILP rules also improves the overall performance of the Medical Text Indexer (MTI), a system producing automatic indexing recommendations for MEDLINE. We expect the sets of ILP rules obtained in this experiment to be integrated into MTI.