Toroidal topology of population activity in grid cells

• Published in: bioRxiv
• Main Authors: Gardner, Richard J, Hermansen, Erik, Pachitariu, Marius, Burak, Yoram, Baas, Nils A, Dunn, Benjamin A, May-Britt Moser, Moser, Edvard I
• Format: Paper
• Language: English
• Published: Cold Spring Harbor Cold Spring Harbor Laboratory Press 25.02.2021; Cold Spring Harbor Laboratory
• Edition: 1.1
• Subjects: Cell culture; Cortex (entorhinal); Cortex (somatosensory); Neuroscience; Population; Sleep and wakefulness; attractor dynamics; continuous attractor networks; hippocampus; Grid cells; neural networks; topological data analysis; entorhinal cortex; persistent cohomology; space; circular parametrization
• ISSN: 2692-8205; 2692-8205
• DOI: 10.1101/2021.02.25.432776

Abstract The medial entorhinal cortex (MEC) is part of a neural system for mapping a subject’s position within a physical environment1,2. Grid cells, a key component of this system, fire in a characteristic hexagonal pattern of locations3, and are organized in modules4,5 which collectively form a population code for the animal’s allocentric position1,6–8. The invariance of the correlation structure of this population code across environments9,10 and behavioural states11,12, independently of specific sensory inputs, has pointed to intrinsic, recurrently connected continuous attractor networks (CANs) as a possible substrate of the grid pattern1,2,13–16. However, whether grid cell networks show continuous attractor dynamics, and how they interface with inputs from the environment, has remained elusive due to the small samples of cells obtained to date. Here we show, with simultaneous recordings from many hundreds of grid cells, and subsequent topological data analysis, that the joint activity of grid cells from an individual module resides on a toroidal manifold, as expected in a two-dimensional CAN. Positions on the torus correspond to the moving animal’s position in the environment. Individual cells are preferentially active at singular positions on the torus. Their positions are maintained, with minimal distortion, between environments and from wakefulness to sleep, as predicted by CAN models for grid cells but not by alternative feed-forward models where grid patterns are created from external inputs by Hebbian plasticity17–22. This demonstration of network dynamics on a toroidal manifold provides the first population-level visualization of CAN dynamics in grid cells. Competing Interest Statement The authors have declared no competing interest.