Genomic Insights into the Population History and Adaptive Traits of Latin American Criollo Cattle

Criollo cattle, descendants of animals brought by Iberian colonists to the Americas, have been subject to centuries of natural and human-mediated selection in novel tropical agroecological zones. Consequently, these breeds have evolved distinct characteristics such as resistance to disease and excep...

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Main Authors Ward, James A, Ng'ang'a, Said I, Randhawa, Imtiaz A S, Mchugo, Gillian P, O'grady, John F, Flórez, Julio M, Browne, John A, Pérez O'brien, Ana M, Landaeta-Hernández, Antonio J, Garcia, José F, Sonstegard, Tad S, Frantz, Laurent A F, Salter-Townshend, Michael, Machugh, David E
Format Paper
LanguageEnglish
Published Cold Spring Harbor Cold Spring Harbor Laboratory Press 06.01.2024
Cold Spring Harbor Laboratory
Edition1.2
Subjects
Adaptability
Bos taurus
Bos taurus indicus
Cattle
Climate change
Disease resistance
Gene flow
Genomics
Heat tolerance
Population structure
Temperature tolerance
Whole genome sequencing
microevolution
population genomics
cattle
selection
thermotolerance
Latin America
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ISSN2692-8205
2692-8205
DOI10.1101/2023.09.10.556512

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Abstract Criollo cattle, descendants of animals brought by Iberian colonists to the Americas, have been subject to centuries of natural and human-mediated selection in novel tropical agroecological zones. Consequently, these breeds have evolved distinct characteristics such as resistance to disease and exceptional heat tolerance. In addition to European taurine (Bos taurus) ancestry, it has been proposed that gene flow from African taurine and Asian zebu (Bos indicus) cattle has shaped the ancestry of Criollo cattle. In this study, we analysed Criollo breeds from Colombia and Venezuela using whole genome sequencing data to examine population structure and admixture at very high resolution. We did not detect evidence of African taurine admixture in Criollo cattle; however, there was evidence of longstanding zebu ancestry in one breed (Hartón del Valle). In addition, we detected selection signatures associated with a myriad of adaptive traits, revealing genes linked to thermotolerance, reproduction, fertility, immunity, and distinct coat and skin coloration traits. This study underscores the remarkable adaptability of Criollo cattle and highlights the genetic richness and potential of these breeds in the face of climate change, habitat flux, and disease challenges. Further research is warranted to leverage these findings for more effective and sustainable cattle breeding programmes.Competing Interest StatementThe authors have declared no competing interest.Footnotes* We have redone some analyses with more appropriate comparator populations. We also rewritten the first part of the Introduction. In addition, some other small typographical errors/mistakes have been corrected.* https://www.ebi.ac.uk/ena/browser/view/PRJEB65887
AbstractList Criollo cattle, descendants of animals brought by Iberian colonists to the Americas, have been subject to centuries of natural and human-mediated selection in novel tropical agroecological zones. Consequently, these breeds have evolved distinct characteristics such as resistance to disease and exceptional heat tolerance. In addition to European taurine (Bos taurus) ancestry, it has been proposed that gene flow from African taurine and Asian zebu (Bos indicus) cattle has shaped the ancestry of Criollo cattle. In this study, we analysed Criollo breeds from Colombia and Venezuela using whole genome sequencing data to examine population structure and admixture at very high resolution. We did not detect evidence of African taurine admixture in Criollo cattle; however, there was evidence of longstanding zebu ancestry in one breed (Hartón del Valle). In addition, we detected selection signatures associated with a myriad of adaptive traits, revealing genes linked to thermotolerance, reproduction, fertility, immunity, and distinct coat and skin coloration traits. This study underscores the remarkable adaptability of Criollo cattle and highlights the genetic richness and potential of these breeds in the face of climate change, habitat flux, and disease challenges. Further research is warranted to leverage these findings for more effective and sustainable cattle breeding programmes.Competing Interest StatementThe authors have declared no competing interest.Footnotes* We have redone some analyses with more appropriate comparator populations. We also rewritten the first part of the Introduction. In addition, some other small typographical errors/mistakes have been corrected.* https://www.ebi.ac.uk/ena/browser/view/PRJEB65887
Criollo cattle, descendants of animals brought by Iberian colonists to the Americas, have been subject to centuries of natural and human-mediated selection in novel tropical agroecological zones. Consequently, these breeds have evolved distinct characteristics such as resistance to disease and exceptional heat tolerance. In addition to European taurine (Bos taurus) ancestry, it has been proposed that gene flow from African taurine and Asian indicine (Bos indicus) cattle has shaped the ancestry of Criollo cattle. In this study, we analysed Criollo breeds from Colombia and Venezuela using whole-genome sequencing (WGS) and single-nucleotide polymorphism (SNP) array data to examine population structure and admixture at high resolution. Analysis of genetic structure and ancestry components provided evidence for African taurine and Asian indicine admixture in Criollo cattle. In addition, using WGS data, we detected selection signatures associated with a myriad of adaptive traits, revealing genes linked to thermotolerance, reproduction, fertility, immunity, and distinct coat and skin coloration traits. This study underscores the remarkable adaptability of Criollo cattle and highlights the genetic richness and potential of these breeds in the face of climate change, habitat flux, and disease challenges. Further research is warranted to leverage these findings for more effective and sustainable cattle breeding programmes.
Author Garcia, José F
Flórez, Julio M
Ng'ang'a, Said I
O'grady, John F
Sonstegard, Tad S
Randhawa, Imtiaz A S
Mchugo, Gillian P
Pérez O'brien, Ana M
Browne, John A
Salter-Townshend, Michael
Machugh, David E
Landaeta-Hernández, Antonio J
Ward, James A
Frantz, Laurent A F
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Keywords microevolution
population genomics
cattle
selection
thermotolerance
Latin America
Language English
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Snippet Criollo cattle, descendants of animals brought by Iberian colonists to the Americas, have been subject to centuries of natural and human-mediated selection in...
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proquest
SourceType Open Access Repository
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SubjectTerms Adaptability
Bos taurus
Bos taurus indicus
Cattle
Climate change
Disease resistance
Gene flow
Genomics
Heat tolerance
Population structure
Temperature tolerance
Whole genome sequencing
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Title Genomic Insights into the Population History and Adaptive Traits of Latin American Criollo Cattle
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https://www.biorxiv.org/content/10.1101/2023.09.10.556512
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