Weak convergence of the scaled jump chain and number of mutations of the Kingman coalescent

• Main Authors: Favero, Martina, Hult, Henrik
• Format: Journal Article
• Language: English
• Published: 13.11.2020
• Subjects: Mathematics - Probability
• DOI: 10.48550/arxiv.2011.06908

The Kingman coalescent is a fundamental process in population genetics modelling the ancestry of a sample of individuals backwards in time. In this paper, in a large-sample-size regime, we study asymptotic properties of the coalescent under neutrality and a general finite-alleles mutation scheme, i.e. including both parent independent and parent dependent mutation. In particular, we consider a sequence of Markov chains that is related to the coalescent and consists of block-counting and mutation-counting components. We show that these components, suitably scaled, converge weakly to deterministic components and Poisson processes with varying intensities, respectively. Along the way, we develop a novel approach to generalise the convergence result from the parent independent to the parent dependent mutation setting. This approach is based on a change of measure and provides a new alternative way to address problems in the parent dependent mutation setting, in which several crucial quantities are not known explicitly.