WikiUMLS: Aligning UMLS to Wikipedia via Cross-lingual Neural Ranking

We present our work on aligning the Unified Medical Language System (UMLS) to Wikipedia, to facilitate manual alignment of the two resources. We propose a cross-lingual neural reranking model to match a UMLS concept with a Wikipedia page, which achieves a recall@1 of 72%, a substantial improvement o...

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Bibliographic Details
Main Authors Rahimi, Afshin, Baldwin, Timothy, Verspoor, Karin
Format Journal Article
LanguageEnglish
Published 04.05.2020
Subjects
Computer Science - Computation and Language
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Summary:We present our work on aligning the Unified Medical Language System (UMLS) to Wikipedia, to facilitate manual alignment of the two resources. We propose a cross-lingual neural reranking model to match a UMLS concept with a Wikipedia page, which achieves a recall@1 of 72%, a substantial improvement of 20% over word- and char-level BM25, enabling manual alignment with minimal effort. We release our resources, including ranked Wikipedia pages for 700k UMLS concepts, and WikiUMLS, a dataset for training and evaluation of alignment models between UMLS and Wikipedia. This will provide easier access to Wikipedia for health professionals, patients, and NLP systems, including in multilingual settings.
DOI:10.48550/arxiv.2005.01281