Utilizing gradient approximations to optimize data selection protocols for tumor growth model calibration

• Main Authors: Lewis, Allison L, Storey, Kathleen M, Cho, Heyrim, Zittle, Anna C
• Format: Journal Article
• Language: English
• Published: 25.12.2021
• Subjects: Computer Science - Information Theory; Mathematics - Dynamical Systems; Mathematics - Information Theory; Quantitative Biology - Quantitative Methods
• DOI: 10.48550/arxiv.2112.13260

The use of mathematical models to make predictions about tumor growth and response to treatment has become increasingly more prevalent in the clinical setting. The level of complexity within these models ranges broadly, and the calibration of more complex models correspondingly requires more detailed clinical data. This raises questions about how much data should be collected and when, in order to minimize the total amount of data used and the time until a model can be calibrated accurately. To address these questions, we propose a Bayesian information-theoretic procedure, using a gradient-based score function to determine the optimal data collection times for model calibration. The novel score function introduced in this work eliminates the need for a weight parameter used in a previous study's score function, while still yielding accurate and efficient model calibration using even fewer scans on a sample set of synthetic data, simulating tumors of varying levels of radiosensitivity. We also conduct a robust analysis of the calibration accuracy and certainty, using both error and uncertainty metrics. Unlike the error analysis of the previous study, the inclusion of uncertainty analysis in this work|as a means for deciding when the algorithm can be terminated|provides a more realistic option for clinical decision-making, since it does not rely on data that will be collected later in time.