YhdP, TamB, and YdbH Are Redundant but Essential for Growth and Lipid Homeostasis of the Gram-Negative Outer Membrane

• Published in: mBio Vol. 12; no. 6; p. e0271421
• Main Authors: Ruiz, Natividad, Davis, Rebecca M, Kumar, Sujeet
• Format: Journal Article
• Language: English
• Published: United States American Society for Microbiology 21.12.2021
• Subjects: AsmA-like proteins; Bacterial Outer Membrane - metabolism; envelope biogenesis; Escherichia coli - genetics; Escherichia coli - growth & development; Escherichia coli - metabolism; Escherichia coli Proteins - genetics; Escherichia coli Proteins - metabolism; Genetics and Molecular Biology; Homeostasis; Lipid Metabolism; Membrane Lipids - metabolism; Membrane Proteins - genetics; Membrane Proteins - metabolism; outer membrane biogenesis; phospholipid transport; Research Article; synthetic lethality; phospholipid transport; outer membrane biogenesis; AsmA-like proteins; envelope biogenesis; synthetic lethality
• ISSN: 2150-7511; 2150-7511
• DOI: 10.1128/mBio.02714-21

The bacterial cell envelope is the first line of defense and point of contact with the environment and other organisms. Envelope biogenesis is therefore crucial for the survival and physiology of bacteria and is often targeted by antimicrobials. Gram-negative bacteria have a multilayered envelope delimited by an inner and outer membrane (IM and OM, respectively). The OM is a barrier against many antimicrobials because of its asymmetric lipid structure, with phospholipids composing the inner leaflet and lipopolysaccharides (LPS) the outer leaflet. Since lipid synthesis occurs at the IM, phospholipids and LPS are transported across the cell envelope and asymmetrically assembled at the OM during growth. How phospholipids are transported to the OM remains unknown. Recently, the Escherichia coli protein YhdP has been proposed to participate in this process through an unknown mechanism. YhdP belongs to the AsmA-like clan and contains domains homologous to those found in lipid transporters. Here, we used genetics to investigate the six members of the AsmA-like clan of proteins in E. coli. Our data show that YhdP and its paralogs TamB and YdbH are redundant, but not equivalent, in performing an essential function in the cell envelope. Among the AsmA-like paralogs, only the combined loss of YhdP, TamB, and YdbH is lethal, and any of these three proteins is sufficient for growth. We also show that these proteins are required for OM lipid homeostasis and propose that they are the long-sought-after phospholipid transporters that are required for OM biogenesis. Gram-negative bacteria like Escherichia coli are characterized by having two membranes. Systems required for the biogenesis of the Gram-negative outer membrane have been identified except for that required for the transport of newly synthesized phospholipids from the inner to the outer membrane. The YhdP protein was previously implicated in this process. Here, we show that YhdP and its homologs TamB and YdbH are redundant in performing an essential function for growth and maintaining lipid homeostasis in the outer membrane. These proteins share a predicted structure with known eukaryotic lipid transporters. Based on our data and previous findings, we propose YhdP, TamB, and YdbH are the missing proteins that transport phospholipids to the outer membrane that have escaped identification because of redundancy.