Arginine Residues Modulate the Membrane Interactions of pHLIP Peptides

• Published in: Journal of chemical information and modeling Vol. 63; no. 14; pp. 4433 - 4446
• Main Authors: Silva, Tomás F. D., Visca, Hannah, Klumpp, Craig, Andreev, Oleg A., Reshetnyak, Yana K., Machuqueiro, Miguel
• Format: Journal Article
• Language: English
• Published: United States American Chemical Society 24.07.2023
• Subjects: Computational Biochemistry; Dichroism; Insertion; Kinetics; Membranes; Multidisciplinary research; Peptides; Protonation; Residues
• ISSN: 1549-9596; 1549-960X
• DOI: 10.1021/acs.jcim.3c00360

Most processes at the water–membrane interface often involve protonation events in proteins or peptides that trigger important biological functions and events. This is the working principle behind the pHLIP peptide technology. A key titrating aspartate (Asp14 in wt) is required to protonate to induce the insertion process, increase its thermodynamic stability when membrane-embedded, and trigger the peptide’s overall clinical functionality. At the core of pHLIP properties, the aspartate pK a and protonation are a consequence of the residue side chain sensing the changing surrounding environment. In this work, we characterized how the microenvironment of the key aspartate residue (Asp13 in the investigated pHLIP variants) can be modulated by a simple point mutation of a cationic residue (ArgX) at distinct sequence positions (R10, R14, R15, and R17). We carried out a multidisciplinary study using pHRE simulations and experimental measurements. Fluorescence and circular dichroism measurements were carried out to establish the stability of pHLIP variants in state III and establish the kinetics of the insertion and exit of the peptide from the membrane. We estimated the contribution of the arginine to the local electrostatic microenvironment, which promotes or hinders other electrostatic players from coexisting in the Asp interaction shell. Our data indicate that the stability and kinetics of the peptide insertion and exit from the membrane are altered when Arg is topologically available for a direct salt-bridge formation with Asp13. Hence, the position of arginine contributes to fine-tuning the pH responses of pHLIP peptides, which finds wide applications in clinics.