Evolution and separation of actinobacterial pyranose and C -glycoside-3-oxidases

• Published in: Applied and environmental microbiology Vol. 90; no. 1; p. e0167623
• Main Authors: Kostelac, Anja, Taborda, André, Martins, Lígia O, Haltrich, Dietmar
• Format: Journal Article
• Language: English
• Published: United States American Society for Microbiology 24.01.2024
• Subjects: Bacteria; Biotechnology; Choline; Enzymes; Enzymology and Protein Engineering; Evolution; Glucose; Glucose - metabolism; Glycosides; Monosaccharides; Oligomerization; Oxidase; Oxidation; Oxidoreductases - metabolism; Phylogeny; Preferences; Pyranose oxidase; Substrate preferences; Substrates; ancestral reconstruction; FAD-dependent C-glycoside-3-oxidase; pyranose oxidase; sequence space; substrate specificity
• ISSN: 0099-2240; 1098-5336; 1098-5336
• DOI: 10.1128/aem.01676-23

FAD-dependent pyranose oxidase (POx) and -glycoside-3-oxidase (CGOx) are both members of the glucose-methanol-choline superfamily of oxidoreductases and belong to the same sequence space. Pyranose oxidases had been studied for their oxidation of monosaccharides such as D-glucose, but recently, a bacterial -glycoside-3-oxidase that is phylogenetically related to POx and that reacts with -glycosides such as carminic acid, mangiferin or puerarin has been described. Since these actinobacterial CGOx enzymes belong to the same sequence space as bacterial POx, they must have evolved from the same ancestor. Here, we performed a phylogenetic analysis of actinobacterial sequences and resurrected seven ancestral enzymes of the POx/CGOx sequence space to study the evolutionary trajectory of substrate preferences for monosaccharides and -glycosides. Clade I, with its dimeric member POx from , shows strict preference for monosaccharides (D-glucose and D-xylose) and does not react with any of the glycosides tested. No extant member of clade II has been studied to date. The two extant members of clades III and IV, monomeric POx/CGOx from and , oxidized both monosaccharides as well as various -glycosides (homoorientin, isovitexin, mangiferin, and puerarin). Steady-state kinetic parameters of several clades III and IV ancestral enzymes indicate that the generalist ancestor N35 slowly evolved to present-day enzymes with a much higher preference for -glycosides than monosaccharides. Based on structural predictions of ancestors, we hypothesize that the strict specificity of bacterial clade I POx (and also fungal POx) is the result of oligomerization, which in turn results from the evolution of protein segments that were shown to be important for oligomerization, the arm, and the head domain.IMPORTANCE -Glycosides often form active compounds in various plants. Breakage of the C-C bond in these glycosides to release the aglycone is challenging and proceeds via a two-step reaction, the oxidation of the sugar and subsequent cleavage of the C-C bond. Recently, an enzyme from a soil bacterium, FAD-dependent -glycoside-3-oxidase (CGOx), was shown to catalyze the initial oxidation reaction. Here, we show that CGOx belongs to the same sequence space as pyranose oxidase (POx), and that an actinobacterial ancestor of the POx/CGOx family evolved into four clades, two of which show a high preference for -glycosides.