The Proteome of Extracellular Vesicles Produced by the Human Gut Bacteria Bacteroides thetaiotaomicron In Vivo Is Influenced by Environmental and Host-Derived Factors

• Published in: Applied and environmental microbiology Vol. 88; no. 16; p. e0053322
• Main Authors: Stentz, Régis, Jones, Emily, Juodeikis, Rokas, Wegmann, Udo, Guirro, Maria, Goldson, Andrew J, Brion, Arlaine, Booth, Catherine, Sudhakar, Padhmanand, Brown, Ian R, Korcsmáros, Tamás, Carding, Simon R
• Format: Journal Article
• Language: English
• Published: United States American Society for Microbiology 23.08.2022
• Subjects: Animals; Asparaginase; Asparaginase - metabolism; Bacteria; Bacterial vesicles; Bacteroides thetaiotaomicron; Bile acids; Cell interactions; Cell signaling; Digestive system; Digestive tract; Dipeptidyl-Peptidases and Tripeptidyl-Peptidases - metabolism; Enrichment; Environmental Microbiology; Extracellular vesicles; Extracellular Vesicles - metabolism; Gastrointestinal Microbiome; Gastrointestinal system; Gastrointestinal tract; Genomics and Proteomics; Gram-negative bacteria; Gram-positive bacteria; Humans; Hydrolase; Intestinal microflora; Mice; Microbiota; Microorganisms; Packaging; Peptidases; Proteins; Proteome - metabolism; Proteomes; Secretion; Spotlight Selection; Vesicles; microbiota; intestine; Bacteroides thetaiotaomicron; bacterial extracellular vesicles; proteome
• ISSN: 0099-2240; 1098-5336
• DOI: 10.1128/aem.00533-22

Bacterial extracellular vesicles (BEVs) released from both Gram-negative and Gram-positive bacteria provide an effective means of communication and trafficking of cell signaling molecules. In the gastrointestinal tract (GIT) BEVs produced by members of the intestinal microbiota can impact host health by mediating microbe-host cell interactions. A major unresolved question, however, is what factors influence the composition of BEV proteins and whether the host influences protein packaging into BEVs and secretion into the GIT. To address this, we have analyzed the proteome of BEVs produced by the major human gut symbiont Bacteroides thetaiotaomicron both and in the murine GIT in order to identify proteins specifically enriched in BEVs produced . We identified 113 proteins enriched in BEVs produced the majority (62/113) of which accumulated in BEVs in the absence of any changes in their expression by the parental cells. Among these selectively enriched proteins, we identified dipeptidyl peptidases and an asparaginase and confirmed their increased activity in BEVs produced . We also showed that intact BEVs are capable of degrading bile acids via a bile salt hydrolase. Collectively these findings provide additional evidence for the dynamic interplay of host-microbe interactions in the GIT and the existence of an active mechanism to drive and enrich a selected group of proteins for secretion into BEVs in the GIT. The gastrointestinal tract (GIT) harbors a complex community of microbes termed the microbiota that plays a role in maintaining the host's health and wellbeing. How this comes about and the nature of microbe-host cell interactions in the GIT is still unclear. Recently, nanosized vesicles naturally produced by bacterial constituents of the microbiota have been shown to influence responses of different host cells although the molecular basis and identity of vesicle-born bacterial proteins that mediate these interactions is unclear. We show here that bacterial extracellular vesicles (BEVs) produced by the human symbiont Bacteroides thetaiotaomicron in the GIT are enriched in a set of proteins and enzymes, including dipeptidyl peptidases, an asparaginase and a bile salt hydrolase that can influence host cell biosynthetic pathways. Our results provide new insights into the molecular basis of microbiota-host interactions that are central to maintaining GIT homeostasis and health.