Searching for the Second Oxidant in the Catalytic Cycle of Cytochrome P450:  A Theoretical Investigation of the Iron(III)-Hydroperoxo Species and Its Epoxidation Pathways

• Published in: Journal of the American Chemical Society Vol. 124; no. 11; pp. 2806 - 2817
• Main Authors: Ogliaro, François, de Visser, Sam P, Cohen, Shimrit, Sharma, Pankaz K, Shaik, Sason
• Format: Journal Article
• Language: English
• Published: Washington, DC American Chemical Society 20.03.2002
• Subjects: Biological and medical sciences; Catalysis; Cell structures and functions; Cytochrome P-450 Enzyme System - chemistry; Cytochrome P-450 Enzyme System - metabolism; Epoxy Compounds - chemistry; Epoxy Compounds - metabolism; Ferric Compounds - chemistry; Ferric Compounds - metabolism; Fundamental and applied biological sciences. Psychology; Hydrogen Peroxide - chemistry; Hydrogen Peroxide - metabolism; Miscellaneous; Molecular and cellular biology; Oxidants - chemistry; Oxidants - metabolism; Oxidation-Reduction; Epoxidation; Cytochrome P450
• ISSN: 0002-7863; 1520-5126
• DOI: 10.1021/ja0171963

Iron(III)-hydroperoxo, [Por(CysS)Fe(III)-OOH]-, a key species in the catalytic cycle of cytochrome P450, was recently identified by EPR/ENDOR spectroscopies (Davydov, R.; Makris, T. M.; Kofman, V.; Werst, D. E.; Sligar, S. G.; Hoffman, B. M. J. Am. Chem. Soc. 2001, 123, 1403−1415). It constitutes the last station of the preparative steps of the enzyme before oxidation of an organic compound and is implicated as the second oxidant capable of olefin epoxidation (Vaz, A. D. N.; McGinnity, D. F.; Coon, M. J. Proc. Natl. Acad. Sci. U.S.A. 1998, 95, 3555−3560), in addition to the penultimate active species, Compound I (Groves, J. T.; Han, Y.-Z. In Cytochrome P450:  Structure, Mechanism and Biochemistry, 2nd ed.; Ortiz de Montellano, P. R., Ed.; Plenum Press:  New York, 1995; pp 3−48). In response, we present a density functional study of a model species and its ethylene epoxidation pathways. The study characterizes a variety of properties of iron(III)-hydroperoxo, such as the O−O bonding, the Fe−S bonding, Fe−O and Fe−S stretching frequencies, its electron attachment, and ionization energies. Wherever possible these properties are compared with those of Compound I. The proton affinities for protonation on the proximal and distal oxygen atoms of iron(III)-hydroperoxo, and the effect of the thiolate ligand thereof, are determined. In accordance with previous results (Harris, D. L.; Loew, G. H. J. Am. Chem. Soc. 1998, 120, 8941−8948), iron(III)-hydroperoxo is a strong base (as compared with water), and its distal protonation leads to a barrier-free formation of Compound I. The origins of this barrier-free process are discussed using a valence bond approach. It is shown that the presence of the thiolate is essential for this process, in line with the “push effect” deduced by experimentalists (Sono, M.; Roach, M. P.; Coulter, E. D.; Dawson, J. H. Chem. Rev. 1996, 96, 2841−2887). Finally, four epoxidation pathways of iron(III)-hydroxperoxo are located, in which the species transfers oxygen to ethylene either from the proximal or from the distal sites, in both concerted and stepwise manners. The barriers for the four mechanisms are 37−53 kcal/mol, in comparison with 14 kcal/mol for epoxidation by Compound I. It is therefore concluded that iron(III)-hydroperoxo, as such, cannot be a second oxidant, in line with its significant basicity and poor electron-accepting capability. Possible versions of a second oxidant are discussed.