Engineering Novosphingobium aromaticivorans to produce cis,cis -muconic acid from biomass aromatics

• Published in: Applied and environmental microbiology Vol. 90; no. 1; p. e0166023
• Main Authors: Vilbert, Avery C, Kontur, Wayne S, Gille, Derek, Noguera, Daniel R, Donohue, Timothy J
• Format: Journal Article
• Language: English
• Published: United States American Society for Microbiology 24.01.2024
• Subjects: Acids; Aromatic compounds; Biomass; Biotechnology; Catechol; Catechol 1,2-dioxygenase; Genes; Genomes; Hydroxybenzoates; Intermediates; Lignin - metabolism; Metabolic Engineering; Metabolism; Microorganisms; Monomers; Muconic acid; Novosphingobium; Protocatechuic acid; Renewable resources; Sorbic Acid - metabolism; Sphingomonadaceae - metabolism; Stoichiometry; Strains (organisms); Sustainable yield; Synthesis; muconic acid; intradiol; decarboxylases; aromatic compounds; lignin; metabolic engineering; Novosphingobium; extradiol; sphingomonads; carbon metabolism
• ISSN: 0099-2240; 1098-5336
• DOI: 10.1128/aem.01660-23

The platform chemical muconic acid ( MA) provides facile access to a number of monomers used in the synthesis of commercial plastics. It is also a metabolic intermediate in the β-ketoadipic acid pathway of many bacteria and, therefore, a current target for microbial production from abundant renewable resources via metabolic engineering. This study investigates DSM12444 as a chassis for the production of MA from biomass aromatics. The genome predicts that it encodes a previously uncharacterized protocatechuic acid (PCA) decarboxylase and a catechol 1,2-dioxygenase, which would be necessary for the conversion of aromatic metabolic intermediates to MA. This study confirmed the activity of these two enzymes and compared their activity to ones that have been previously characterized and used in MA production. From these results, we generated one strain that is completely derived from native genes and a second that contains genes previously used in microbial engineering synthesis of this compound. Both of these strains exhibited stoichiometric production of MA from PCA and produced greater than 100% yield of MA from the aromatic monomers that were identified in liquor derived from alkaline pretreated biomass. Our results show that a strain completely derived from native genes and one containing homologs from other hosts are both capable of stoichiometric production of MA from biomass aromatics. Overall, this work combines previously unknown aspects of aromatic metabolism in and the genetic tractability of this organism to generate strains that produce MA from deconstructed biomass.IMPORTANCEThe production of commodity chemicals from renewable resources is an important goal toward increasing the environmental and economic sustainability of industrial processes. The aromatics in plant biomass are an underutilized and abundant renewable resource for the production of valuable chemicals. However, due to the chemical composition of plant biomass, many deconstruction methods generate a heterogeneous mixture of aromatics, thus making it difficult to extract valuable chemicals using current methods. Therefore, recent efforts have focused on harnessing the pathways of microorganisms to convert a diverse set of aromatics into a single product. DSM12444 has the native ability to metabolize a wide range of aromatics and, thus, is a potential chassis for conversion of these abundant compounds to commodity chemicals. This study reports on new features of that can be used to produce the commodity chemical -muconic acid from renewable and abundant biomass aromatics.