Temperature-Dependent Trimethylamine N‑Oxide Induced the Formation of Substance P Dimers

• Published in: The journal of physical chemistry. B Vol. 128; no. 46; pp. 11369 - 11378
• Main Authors: Lantz, Carter, Xi, Zhenyu, Rider, Robert L., Walker, Thomas E., Hebert, Michael, Russell, David H.
• Format: Journal Article
• Language: English
• Published: United States American Chemical Society 21.11.2024
• Subjects: B: Biophysical and Biochemical Systems and Processes; cold; dimerization; electrospray ionization mass spectrometry; Gibbs free energy; hydrogen; hydrophobicity; molecular dynamics; oligomerization; substance P; trimethylamine; urea
• ISSN: 1520-6106; 1520-5207; 1520-5207
• DOI: 10.1021/acs.jpcb.4c04951

Interactions of the peptide substance P (SP) (RPKPQQFFGLM-NH2) with trimethylamine N-oxide (TMAO) were investigated by using cryo-ion mobility-mass spectrometry (cryo-IM-MS), variable-temperature (278–358 K) electrospray ionization (vT-ESI) MS, and molecular dynamics (MD) simulations. Cryo-IM-MS provides evidence that cold solutions containing SP and TMAO yield abundant hydrated SP dimer ions, but dimer formation is inhibited in solutions that also contain urea. In addition, we show that SP dimer formation at cold solution temperatures (<298 K) is favored when TMAO interacts with the hydrophobic C-terminus of SP and is subject to reduced entropic penalty when compared to warmer solution conditions (>298 K). MD simulations show that TMAO lowers the free energy barrier for dimerization and that monomers dimerize by forming hydrogen bonds (HBs). Moreover, differences in oligomer abundances for SP mutants (P4A, P2,4A, G9P, and P2,4A/G9P) provide evidence that oligomerization facilitated by TMAO is sensitive to the cis/trans orientation of residues at positions 2, 4, and 9.