Effects of High Temperature on Desolvation Costs of Salt Bridges Across Protein Binding Interfaces: Similarities and Differences between Implicit and Explicit Solvent Models

• Published in: The journal of physical chemistry. B Vol. 116; no. 8; pp. 2561 - 2567
• Main Authors: Salari, Reza, Chong, Lillian T
• Format: Journal Article
• Language: English
• Published: United States American Chemical Society 01.03.2012
• Subjects: Analogies; Binding; Costs; Fluid dynamics; Mathematical models; Models, Molecular; Outliers (statistics); Protein Binding; Proteins; Proteins - chemistry; Salts - chemistry; Solubility; Solvents; Solvents - chemistry; Temperature
• ISSN: 1520-6106; 1520-5207
• DOI: 10.1021/jp210172b

The role of salt bridges in protein–protein binding is largely determined by the costs of desolvating the oppositely charged members of the salt bridge upon binding. On the basis of Poisson–Boltzmann (PB) implicit solvent calculations, it has been proposed that the reduced desolvation penalties of salt bridges at high temperatures provide one explanation for the increased abundance of salt bridges in hyperthermophilic proteins. Here, for the first time, we directly compare the PB implicit solvent model with several explicit water models in computing the effects of extremely high temperature (i.e., 100 °C) on the desolvation penalties of salt bridges across protein–protein interfaces. With the exception of two outliers, the desolvation costs at 100 °C from implicit and explicit solvent calculations are of similar magnitudes and significantly reduced relative to 25 °C. The two outliers correspond to salt bridges that are both buried and part of a salt bridge network, a challenging case that should be considered in the development of fast solvation models.